View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_high_34 (Length: 240)
Name: NF9856_high_34
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27393659 - 27393437
Alignment:
| Q |
1 |
ttttccagtctacgtaggtgaaaaccgtagtagatatattgttccaatatcttttttaactcatcctgagtttcaatcactacttcgtcaagctgaagaa |
100 |
Q |
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| T |
27393659 |
ttttccagtctacgtaggtgaaaaccgtagtagatatattgttccaatatcttttttaactcatcctgagtttcaatcactacttcgtcaagctgaagaa |
27393560 |
T |
|
| Q |
101 |
gaatttggttttgatcatgatatgggccttactattccttgtcaagaagttgtttttcaatctctaacatcaatgattagatgaaagagaatgacataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27393559 |
gaatttggttttgatcatgatatgggccttactattccttgtcaagaagttgtttttcaatctctaacatcaatgattagatgaaagagaatgacatata |
27393460 |
T |
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| Q |
201 |
taaatggttgtgaatatttggag |
223 |
Q |
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| T |
27393459 |
taaatggttgtgaatatttggag |
27393437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 55072351 - 55072200
Alignment:
| Q |
17 |
ggtgaaaaccgtagtagatatattgttccaatatcttttttaactcatcctgagtttcaatcactacttcgtcaagctgaagaagaatttggttttgatc |
116 |
Q |
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| T |
55072351 |
ggtgaaaacagaagcagatatattgtaccaatctcattcttaactcaccctcaatttcagtcactccttcgacaagctgaagaagaatttggctttgatc |
55072252 |
T |
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| Q |
117 |
atgatatgggccttactattccttgtcaagaagttgtttttcaatctctaac |
168 |
Q |
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| T |
55072251 |
acgacatgggactcaccattccttgtcaagaagttgtttttcgatccctaac |
55072200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 29233654 - 29233689
Alignment:
| Q |
86 |
cgtcaagctgaagaagaatttggttttgatcatgat |
121 |
Q |
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| T |
29233654 |
cgtcaagctgaagaagagtttggttttgatcatgat |
29233689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 8510725 - 8510634
Alignment:
| Q |
91 |
agctgaagaagaatttggttttgatcatgatatgggccttactattccttgtcaagaagttgtttttcaatctctaacatcaatgattagat |
182 |
Q |
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||||||||| |||||||| || ||||||||||||| |||||||| |||||| | |||||| ||||| | || |||| |||||||| |||| |
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| T |
8510725 |
agctgaagatgaatttggcttcaatcatgatatgggacttactatcccttgtgatgaagttttttttgagtccttaacttcaatgatgagat |
8510634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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