View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_high_36 (Length: 232)
Name: NF9856_high_36
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 11068960 - 11069162
Alignment:
| Q |
15 |
agagaattgttttttaagatttaagatctcgtctaaaatgaatcaatatgttgaatgaagctaacctaaacacacaacaataccaaacctaaaataataa |
114 |
Q |
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| T |
11068960 |
agagaattgttttttaagatttaagatctcgtctaaaatgaatcaatatgttgaatgaagctaacttaaacacacaacaatatcaaacctagaataataa |
11069059 |
T |
|
| Q |
115 |
agaataaatatttctgcaagcacgaattactaacttcaatcttattgaatacgatcaattacagagctgtcattattataaattacataataaccacata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
11069060 |
agaataaatatttctgcaagcacgaattactaacttcaatcttattgaatacgatcaattacagaggtgtcatta-tataaattacataataaccacata |
11069158 |
T |
|
| Q |
215 |
tatt |
218 |
Q |
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|||| |
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| T |
11069159 |
tatt |
11069162 |
T |
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