View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9856_high_5 (Length: 446)

Name: NF9856_high_5
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9856_high_5
NF9856_high_5
[»] chr7 (9 HSPs)
chr7 (1-428)||(39593582-39594012)
chr7 (35-260)||(39585317-39585542)
chr7 (37-253)||(39578994-39579210)
chr7 (52-177)||(39626261-39626386)
chr7 (317-422)||(39578772-39578877)
chr7 (316-403)||(39626014-39626101)
chr7 (317-418)||(39569233-39569334)
chr7 (35-104)||(39344157-39344226)
chr7 (35-104)||(39552745-39552814)
[»] chr2 (3 HSPs)
chr2 (316-354)||(44237799-44237837)
chr2 (318-354)||(44214849-44214885)
chr2 (318-354)||(44227006-44227042)


Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 39594012 - 39593582
Alignment:
Q  1 ttgagtgttttggaggcataaaaaatggagagttatgatgaa---gaggctttaaaatgggctgcaattcagagacttccaactgttacacgtttgagaa 97  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39594012 ttgagtgttttggaggcataaaaaatggagagttatgatgaattagaggctttaaaatgggctgcaattcagagacttccaactgttacacgtttgagaa 39593913  T
Q  98 gaggtttattgattaactctgaaggagaggctaatgaaattgatgttcacaaaattggattacaagaaagaaaatatttgttagaaagactagtgagaat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39593912 gaggtttattgattaactctgaaggagaggctaatgaaattgatgttcacaaaattggattacaagaaagaaaatatttgttagaaagactagtgagaat 39593813  T
Q  198 tgctgatgctgataatgaaaatttgttgttgaagcttaaggatcgcattgataggtaacatttttcaatcttttatattttattttatcctagcttataa 297  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39593812 tgctgatgctgataatgaaaatttcttgttgaagcttaaggatcgcattgataggtaacatttttcaatcttttatattttattttatcctagcttataa 39593713  T
Q  298 aaatgtacttatgatataacagagttggagttgatattcctacaattgaagttcgatttgaaaatttgaagattgaaacagaagttcatgcaggaaagag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39593712 aaatgtacttatgatataacagagttggagttgatattcctacaattgaagttcgatttgaaaatttgaagattgaaacagaagttcatgcaggaaagag 39593613  T
Q  398 agctttacctaccctcactaattacactctt 428  Q
    |||||||||||||||||||||||||||||||    
T  39593612 agctttacctaccctcactaattacactctt 39593582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 35 - 260
Target Start/End: Complemental strand, 39585542 - 39585317
Alignment:
Q  35 atgatgaagaggctttaaaatgggctgcaattcagagacttccaactgttacacgtttgagaagaggtttattgattaactctgaaggagaggctaatga 134  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||| |||| ||||| |||||||| |||| || |||| ||||| ||| |  |||    
T  39585542 atgatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttgttgactacctctaaaggacaggtttgtga 39585443  T
Q  135 aattgatgttcacaaaattggattacaagaaagaaaatatttgttagaaagactagtgagaattgctgatgctgataatgaaaatttgttgttgaagctt 234  Q
    |||||||||  ||||| ||||    |||||||| | |||  || |||| ||||| ||||||||||| |||| ||| ||||| || ||||| ||||||||     
T  39585442 aattgatgtatacaaacttgggcagcaagaaaggagatacctgatagatagactggtgagaattgcagatgttgacaatgagaaattgttattgaagctc 39585343  T
Q  235 aaggatcgcattgataggtaacattt 260  Q
    | |||||||||| |||||| ||||||    
T  39585342 agggatcgcattcataggtgacattt 39585317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 253
Target Start/End: Complemental strand, 39579210 - 39578994
Alignment:
Q  37 gatgaagaggctttaaaatgggctgcaattcagagacttccaactgttacacgtttgagaagaggtttattgattaactctgaaggagaggctaatgaaa 136  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||| |||| ||||| |||||||| |||| || |||| ||||| ||| |  |||||    
T  39579210 gatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttgttgactacctctaaaggacaggtttgtgaaa 39579111  T
Q  137 ttgatgttcacaaaattggattacaagaaagaaaatatttgttagaaagactagtgagaattgctgatgctgataatgaaaatttgttgttgaagcttaa 236  Q
    |||||||  ||||  ||||    |||||||| | |||  || |||| ||||| ||||||||||| |||| ||| ||||| || ||||| |||||||| |     
T  39579110 ttgatgtatacaatcttgggcagcaagaaaggagatacctgatagatagactggtgagaattgcagatgttgacaatgagaaattgttattgaagctcag 39579011  T
Q  237 ggatcgcattgataggt 253  Q
    |||||||||| ||||||    
T  39579010 ggatcgcattcataggt 39578994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 39626386 - 39626261
Alignment:
Q  52 aaatgggctgcaattcagagacttccaactgttacacgtttgagaagaggtttattgattaactctgaaggagaggctaatgaaattgatgttcacaaaa 151  Q
    ||||||| | |||||||||| |||||||| ||| |||||||||| |||||||||||||  |   ||||||||||  | |||||||||||||| |||||||    
T  39626386 aaatgggattcaattcagaggcttccaacagttgcacgtttgaggagaggtttattgaccactcctgaaggagactccaatgaaattgatgtacacaaaa 39626287  T
Q  152 ttggattacaagaaagaaaatatttg 177  Q
    |||| || |||||||||| |||||||    
T  39626286 ttgggttgcaagaaagaacatatttg 39626261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 39578877 - 39578772
Alignment:
Q  317 cagagttggagttgatattcctacaattgaagttcgatttgaaaatttgaagattgaaacagaagttcatgcaggaaagagagctttacctaccctcact 416  Q
    |||||||||| || || |||||||||| ||||| ||||||||  | ||||| || ||  |||||||||| | |||||| |||||||| ||||||||||||    
T  39578877 cagagttggaattaatcttcctacaatcgaagtccgatttgagcacttgaatatcgaggcagaagttcacgtaggaaaaagagctttgcctaccctcact 39578778  T
Q  417 aattac 422  Q
    ||||||    
T  39578777 aattac 39578772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 39626101 - 39626014
Alignment:
Q  316 acagagttggagttgatattcctacaattgaagttcgatttgaaaatttgaagattgaaacagaagttcatgcaggaaagagagcttt 403  Q
    |||||| ||||||||| ||||||||||||||||||||||||||  | |||||  |  || || ||||||||| |||||||||||||||    
T  39626101 acagagctggagttgacattcctacaattgaagttcgatttgagcacttgaatgtccaagcacaagttcatgtaggaaagagagcttt 39626014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 39569334 - 39569233
Alignment:
Q  317 cagagttggagttgatattcctacaattgaagttcgatttgaaaatttgaagattgaaacagaagttcatgcaggaaagagagctttacctaccctcact 416  Q
    |||||||||||||||| |||||||||| ||||||||||| ||| |  |||| || ||| |||||| || || |||||  ||| |||| |||||| |||||    
T  39569334 cagagttggagttgatcttcctacaatagaagttcgattcgaacacctgaatatcgaagcagaagctcgtgtaggaagcagatctttgcctaccttcact 39569235  T
Q  417 aa 418  Q
    ||    
T  39569234 aa 39569233  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 39344157 - 39344226
Alignment:
Q  35 atgatgaagaggctttaaaatgggctgcaattcagagacttccaactgttacacgtttgagaagaggttt 104  Q
    |||||||||| ||| | ||||||||||||||||||| |||||| ||| ||  ||||||||| | ||||||    
T  39344157 atgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggttt 39344226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 39552814 - 39552745
Alignment:
Q  35 atgatgaagaggctttaaaatgggctgcaattcagagacttccaactgttacacgtttgagaagaggttt 104  Q
    |||||||||| ||| | ||||||||||||||||||| |||||| ||| ||  ||||||||| | ||||||    
T  39552814 atgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggttt 39552745  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 44237837 - 44237799
Alignment:
Q  316 acagagttggagttgatattcctacaattgaagttcgat 354  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  44237837 acagagttggacttgatattccaacaattgaagttcgat 44237799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 44214885 - 44214849
Alignment:
Q  318 agagttggagttgatattcctacaattgaagttcgat 354  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  44214885 agagttggacttgatattccaacaattgaagttcgat 44214849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 44227042 - 44227006
Alignment:
Q  318 agagttggagttgatattcctacaattgaagttcgat 354  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  44227042 agagttggacttgatattccaacaattgaagttcgat 44227006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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