View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_high_8 (Length: 386)
Name: NF9856_high_8
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 20068642 - 20068272
Alignment:
| Q |
1 |
cctaaacttcacaaatgcatcacacttgcgcacaaccgtaactttcaatttcgccattccatccgaacacacattccacagcctctctttccttccacca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20068642 |
cctaaacttcacaaatgcatcacacttgcgcacaaccgtaactttcaatttcgccattccatccgaacacacattccacagcctctccttccttccacca |
20068543 |
T |
|
| Q |
101 |
ccttgtaaattcatatcctcccctctaccgaaaaccttaaaatccaaaacttcaagatcacaacaattgtactcaataggactcccattcacatccaaaa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20068542 |
ccttgtaaattcacatcctcccctctaccgaaaaccctaaaatccaaaacttcaagatcacagcaattgtactcaataggactcccattcacatccaaaa |
20068443 |
T |
|
| Q |
201 |
tctcaagagtcaattgtaccttaacttccctagaacaacaacgaacagaaatccacaaaaccccaattttgggatatatcaaaccaaaaggaacaagagc |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20068442 |
tctcaagagtcaattgaaccttaacttccctagaacaacaacgaacagaaatccacgaaaccccaattttgggatatatcaaaccaaaaggaacaagagc |
20068343 |
T |
|
| Q |
301 |
agaaccaagcaaaattgaatccaaagaacaaaaaccccaacccaatttcccagtcccaatctcaaacaaac |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20068342 |
agaaccaagcaaaattgaatccaaagaacaaaaaccccaacccaatttcccagtcccaatctcaaacaaac |
20068272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 9219998 - 9219957
Alignment:
| Q |
57 |
ttccatccgaacacacattccacagcctctctttccttccac |
98 |
Q |
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|||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
9219998 |
ttccattcgaacacacattccacagcctctccttcattccac |
9219957 |
T |
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