View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_11 (Length: 377)
Name: NF9856_low_11
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 35146143 - 35146491
Alignment:
| Q |
19 |
ccaaggcatagcattggccaagcaccactaaaagaaccaagtgatccattctgaatattattgatttgttgattcaaaacactcccttcctctgctgtta |
118 |
Q |
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| T |
35146143 |
ccaaggcatagcataggccaagcaccactaaaagaaccaagtgatccattctgaatattattgatttgttgattcaaaacactcccttcctctgctgtta |
35146242 |
T |
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| Q |
119 |
ttgatgttacatgccattgccactcctttagggcaacatgaccaatgactcttccccacttttgcttcatgtgaatttcccaaaaatgatcacttctaca |
218 |
Q |
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| T |
35146243 |
ttgatgttacatgccattgccactcctttagggcaacatgaccaatgactcttccccacttttgcttcatgtgaatttcccaaaaatgatcacttctaca |
35146342 |
T |
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| Q |
219 |
tttatttcttagacaaatgcatacttcagacattttgatgagttctattggtgaaagacgttcgagaattccatctaaaatggattcgggaaaattcaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35146343 |
tttatttcttagacaaatgcatacttcagacattttgatgagttctattggtgaaagacgttcgagaattccatctaaaatggattcgggaaaattcaaa |
35146442 |
T |
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| Q |
319 |
agagagatgctaacactatttgcaattttcttcattctagtttcctttg |
367 |
Q |
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| T |
35146443 |
agagagatgctaacactatttgcaattttcttcattctagtttcctttg |
35146491 |
T |
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