View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_13 (Length: 373)
Name: NF9856_low_13
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 96 - 363
Target Start/End: Original strand, 12227754 - 12228021
Alignment:
| Q |
96 |
atgagattttaggtattctttggtataagattttagataaatgaaggtagaatgcacttttgagtttaaagttatctattttgttgttgttttacatgct |
195 |
Q |
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| T |
12227754 |
atgagattttaggtattctttggtataagattttagataaatgaaggtagaatgcacttttgagtttaaagttacctattttgttgttgttttacatgct |
12227853 |
T |
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| Q |
196 |
tgcattaccttaattacatgtattgaaaaagaaaatgtaattattttttattgagggtataaaccatggtttcttgatttctctcatagctagtagcaat |
295 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12227854 |
cgcattaccttaattacatatattgaaaaagaaaatgtaattattttttattgagggtataaaccatggtttcttgatttctctcatagctagtagcaat |
12227953 |
T |
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| Q |
296 |
aagaagacactaaatccagttcacataagaaaagtttcatatcacacatacaaccactcttctctctg |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
12227954 |
aagaagacactaaatccagttcacataagaaaagtttcatatcacacatacaactactcttctttctg |
12228021 |
T |
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