View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_14 (Length: 363)
Name: NF9856_low_14
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29170085 - 29170346
Alignment:
| Q |
1 |
tcttcattgttgttacatcctttgattcttgaattacaacaactatgaaatcaaactttgaagttaaggtcctagttaccttttcaatcacttattgatc |
100 |
Q |
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| T |
29170085 |
tcttcattgttgttacatcctttgattcttgaattacaacaactatgaaatcaaactttgaagttaaggtcctagttaccttttcaatcacttattgatc |
29170184 |
T |
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| Q |
101 |
agtaacaacatcactacatgctttcatttgattcaccattgtgatcaatcttgagaaataataagctatatatcttttgatcttcctccatagcgttcaa |
200 |
Q |
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| T |
29170185 |
agtaacaacatcactacatgctttcatttgattcaccatagtgatcaatcttgagaaataataagc----tatcttttgatcttcctccata-------- |
29170272 |
T |
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| Q |
201 |
ttcgtactttcttcttaaagattgaagcttgacctactttactttgtctacaccttcatgatacttctctactatgtt |
278 |
Q |
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| T |
29170273 |
----tcctttcttcttaaagattgaagcttgacctactttactttgtctacaccttcatgatacttctctactatgtt |
29170346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 29170390 - 29170475
Alignment:
| Q |
274 |
atgtttgtatcaacaccttactaaatatagaataacactttacaatctttcttctttgcatattttaagtttgttctctgctcctc |
359 |
Q |
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| T |
29170390 |
atgtttgtatcaacaccttactaaatatagaataacactttacaatctttcttctttgcatattttaagtttgttctttgatcctc |
29170475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36617870 - 36617816
Alignment:
| Q |
1 |
tcttcattgttgttacatcctttgattcttgaattacaacaactatgaaatcaaa |
55 |
Q |
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| T |
36617870 |
tcttcatagttttcacatcctttgattcttgaatgacaacaactatgaaatcaaa |
36617816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 10275525 - 10275467
Alignment:
| Q |
15 |
acatcctttgattcttgaattacaacaactatgaaatcaaactttgaagttaaggtcct |
73 |
Q |
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| T |
10275525 |
acatcctttgattcatgaattactaccacaatgaaatcaaaccttgaagatagggtcct |
10275467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 53977845 - 53977805
Alignment:
| Q |
15 |
acatcctttgattcttgaattacaacaactatgaaatcaaa |
55 |
Q |
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| T |
53977845 |
acatcctttgattcttgaattgcaaccactataaaatcaaa |
53977805 |
T |
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