View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_15 (Length: 359)
Name: NF9856_low_15
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 30516804 - 30517141
Alignment:
| Q |
6 |
tttggtgttgtgagctgtacaaggaagaaatttgttgacttgtagcatcatgagaaacatccttaacattaacattaatgtttcctagtggaagtgaagt |
105 |
Q |
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| T |
30516804 |
tttggtgttgtgagctgtacaaggaagaaatttgttgacttgtagcatcatgagaaacatccttaacattaacattaatgtttcctagtggaagtgaagt |
30516903 |
T |
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| Q |
106 |
tgtagtactagtaattaattcttggctgcaattgtttgaaagtttagttccaaaaacccaatttagctgataattattagaatatggtggagggttctca |
205 |
Q |
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| T |
30516904 |
tgtagtactagtaattaattcttggctgcaattgtttgaaagtttagttccaaaaacccaatttagctgataattattagaatatggtggagggttctca |
30517003 |
T |
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| Q |
206 |
tttccaccatacataatttctcttgaagatgagtcaatttgttgatgaatctcatgcaaactagaatttccattggtggtggttatcattgtttcatgag |
305 |
Q |
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| T |
30517004 |
tttccaccatacataatttctcttgatgatgagtcaagttgttgttgaatctcatgcaaactagaatttccattggtggtggttatcattgtttcatgag |
30517103 |
T |
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| Q |
306 |
gttgagaatgagaagtttgattcatccaaagggatagt |
343 |
Q |
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| T |
30517104 |
gttgagaatgagaagtttgattcatccaaagggatagt |
30517141 |
T |
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