View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9856_low_18 (Length: 344)
Name: NF9856_low_18
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_18 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 31352554 - 31352231
Alignment:
| Q |
18 |
agtggtaacagtaatttctgagcaaatcaacaagttctttagaactgggatagatggatnnnnnnnnnnnnnngaaggcgagatcttcggcttgcaagag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31352554 |
agtggtaacagtaatttctgagcaaatcaacaagttctttagaactgggatagatggataaaaaaaaaaa---gaaggcgagatcttcggcttgcaagag |
31352458 |
T |
|
| Q |
118 |
gttcttgaagttgtccactgttgaagcgctccctgtaaacctgacaaaagctctaagaaattcgcataaagatgcaaataagaaagactgcaagacctta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31352457 |
gttcttgaagttgtccactgttgaagcgctccctgtaaagctgacaaaagctctaagaaattcgcataaagatgcaaataagaaagacttcaagacctta |
31352358 |
T |
|
| Q |
218 |
ttatatattcatcaatgtgtagataacaaggtgttcgagacaactgttgatgcatatagctcaaaggctatgtgggacacacttatgaattttggtggtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31352357 |
ttatatattcatcaatgtgtagataacaaggtgttcgagaaaactgttgatgcatatagctcaaaggctatgtgggacacacttatgaattttggtggtg |
31352258 |
T |
|
| Q |
318 |
atgcaaaggtgaagagggttcgattat |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31352257 |
atgcaaaggtgaagagggttcgattat |
31352231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 344
Target Start/End: Complemental strand, 46339237 - 46339064
Alignment:
| Q |
173 |
agaaattcgcataaagatgcaaataagaaagactgcaagaccttattatatattcatcaatgtgtagataacaaggtgttcgagacaactgttgatgcat |
272 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||||||| |||||||||||| | | || ||||||||||| |
|
|
| T |
46339237 |
agaaattcgcataaagatgcagggaatggagattgcaaagccttatcctacattcatcaatgtgtagagaacaaggtgttc-aaaaaattgttgatgcat |
46339139 |
T |
|
| Q |
273 |
atagctcaaaggctatgtgggacacacttatga---attttggtggtgatgcaaaggtgaagagggttcgattat |
344 |
Q |
| |
|
|||||||||||| | ||| |||||||| ||| ||| ||||||||||||||| ||||||| || |||||||| |
|
|
| T |
46339138 |
atagctcaaaggttgcatggaacacacttgtgaaatattgtggtggtgatgcaaatgtgaagaaggatcgattat |
46339064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 46339316 - 46339284
Alignment:
| Q |
99 |
gatcttcggcttgcaagaggttcttgaagttgt |
131 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
46339316 |
gatctttggcttgcaagaggttcttgaagttgt |
46339284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University