View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_2 (Length: 558)
Name: NF9856_low_2
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Complemental strand, 6286000 - 6285473
Alignment:
| Q |
18 |
gaagcatcttttgaaaatttgcttatgacatcttcaatgtcatctcatctcatataaacttaactttagtaattaaacttaccatatttagtgctcaaag |
117 |
Q |
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| T |
6286000 |
gaagcatcttttgaaaatttgcttatgacatcttcaatgtcatctcat-----ataaacttaactttagtaattatacttaccatatttagtgctcaaag |
6285906 |
T |
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| Q |
118 |
aaaagcacatacaccaataatttcacaacacattgtatattgcagtcacagtcattttttgtcaatctctaatgatgtacaatacgttaaaacaaccaac |
217 |
Q |
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| T |
6285905 |
aaaagcgcatacaccaataatttcacaacacattgtatattgcagtcacagtcattttttgtcaatctctaatgatgtacaatacgttaaaacaaccaac |
6285806 |
T |
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| Q |
218 |
atcatcacacacttaaagacaaacatatacaacataggtaataactttcaccaataagatcaatacatatatgatataaatgcatgttaccaacatgcat |
317 |
Q |
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| T |
6285805 |
atcatcacacacttaaagacaaacatatacaacataggtaataactttcaccaataagatcaatacatatatgatataaatgcatgttaccaacatgcat |
6285706 |
T |
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| Q |
318 |
tgtaaactc--aaactaaaagaaaccaaaacatgggatctatttctgaagatattcatgttcttccaaaatgttcaccttttgaagtagaagaagatgat |
415 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6285705 |
tgtaaactcaaaaactaaaagaaaccaaaacatgggatctatttctgaagatattcatgttcttccaaaatgttcaccttttgaagtagtagaagatgat |
6285606 |
T |
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| Q |
416 |
gatgcatgtctctctgctatgcttctttgttgtggtccaatgatttatacttctgtgttaaaatctgccattgaattaaacctatttgatattatatcaa |
515 |
Q |
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| T |
6285605 |
gatgcatgtctctctgctatgcttctttgttgtggtccaatgatttatacttctgtgttaaaatctgcaattgaattaaacctatttgatattatatcaa |
6285506 |
T |
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| Q |
516 |
aggtaaatccaccaggtgtttcagcatcctatg |
548 |
Q |
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| T |
6285505 |
aggcaaatccaccaggtgtttcagcatcctatg |
6285473 |
T |
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