View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9856_low_20 (Length: 324)

Name: NF9856_low_20
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9856_low_20
NF9856_low_20
[»] chr7 (1 HSPs)
chr7 (19-308)||(41705369-41705658)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 41705658 - 41705369
Alignment:
Q  19 ccaaagtcgtttctctttgcatcttacaaaagagagtatatttataaaagccatttataggaacatatacatctagtatcaattggtcccatagatcttt 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705658 ccaaagtcgtttctctttgcatcttacaaaagagcgtatatttataaaagccatttataggaacatatacatctagtatcaattggtcccatagatcttt 41705559  T
Q  119 atatttttatggtattccatattgtagattcttggagccactttattccatttcagtagctatgcatagcctttttatttctttgattgcattcatatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705558 atatttttatggtattccatattgtagattcttggagccactttattccatttcagtagctatgcatagcctttttatttctttgattgcattcatatca 41705459  T
Q  219 atgcataacagttttcttctcttaattatccatgcaaaatgattattgaatcaactaggagacattgttttcattttagctatgcctttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705458 atgcataacagttttcttctcttaattatccatgcaaaatgattattgaatcaactaggagacattgttttcattttagctatgcctttt 41705369  T

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