View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_25 (Length: 259)
Name: NF9856_low_25
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 19923797 - 19924056
Alignment:
| Q |
1 |
agacaatatttgttgtcaagggggtggtaccatcaaaagcatagaaatagttgaaccaccaaaacccaagccagcacca------cccaaagagcaagnn |
94 |
Q |
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| T |
19923797 |
agacaatatttgttgtcaagggggtggtaccatcaaaagcatagaaatagttgaaccaccaaaacccaagccagcacctgagaagcccaaagagccagaa |
19923896 |
T |
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| Q |
95 |
nnnnngcccgtggccgaggcaaagccgattgcacaacctggcccgcctaaacaaaatccaagtccagctccag------------ctccggctcaggcac |
182 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19923897 |
aaaaagcccgtgcccgaggcaaagccgattgcacaacctggcccgcctaaacaaaatccaagtccagctccagctccggcaccagctccggctcaggcac |
19923996 |
T |
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| Q |
183 |
cggctccacttccttccgcggctgcaccagctgtaatgtttcctcagacagcgccaatgt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19923997 |
cggctccacttccttccgcggctgcaccagctgtaatgtttcctcagacagcgccaatgt |
19924056 |
T |
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