View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9856_low_26 (Length: 258)
Name: NF9856_low_26
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 7086879 - 7086649
Alignment:
| Q |
17 |
cataacagcctcacaggaaggcttccaattggtagcatatttcaaaacttggacaaaagttctttggaaggaaactatggtctttgttcgcccttgttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7086879 |
cataacagcctcacaggaaggcttccaattggtagcatatttcaaaacttggacaaaagttctttggaaggaaactatggtctttgttcgcccttgttga |
7086780 |
T |
|
| Q |
117 |
caggtccatgcaaaatgaatgtaccaaaacctctagtacttgatccacatggctataacgatcaaatgaatcctcgaatcccaagaaatgaatcatctga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7086779 |
caggtccatgcaaaatgaatgtaccaaaacctctagtacttgatccacatggctataacgatcaaatgaatcctcgaatcccaagaaatgaatcatctga |
7086680 |
T |
|
| Q |
217 |
gtctagtagtccaattcatcaccacaggttc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7086679 |
gtctagtagtccaattcatcaccacaggttc |
7086649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 7035062 - 7035292
Alignment:
| Q |
17 |
cataacagcctcacaggaaggcttccaattggtagcatatttcaaaacttggacaaaagttctttggaaggaaactatggtctttgttcgcccttgttga |
116 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7035062 |
cataacagcctcacaggaaagcttctaattggtagcatatttcaaaacttggacaaaagttctttggaaggaaactatggtctttgttcgcccttgttga |
7035161 |
T |
|
| Q |
117 |
caggtccatgcaaaatgaatgtaccaaaacctctagtacttgatccacatggctataacgatcaaatgaatcctcgaatcccaagaaatgaatcatctga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7035162 |
caggtccatgcaaaatgaatgtaccaaaacctctagtacttgatccacatggctataacgatcaaatggatcctcgaatcccaagaaatgaatcatctga |
7035261 |
T |
|
| Q |
217 |
gtctagtagtccaattcatcaccacaggttc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7035262 |
gtctagtagtccaattcatcaccacaggttc |
7035292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University