View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_30 (Length: 250)
Name: NF9856_low_30
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_30 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 7523598 - 7523358
Alignment:
| Q |
10 |
gcagagacaagaggaagaatgggatgtggtggatttacaaaaccgcctctattttaaggtttaaatacccaaattattcatggtaaaatttactctaaat |
109 |
Q |
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| T |
7523598 |
gcagagacaagaggaagaatgggatgtggtggatttacaaaaccgcctctgttttaaggtttaaatacccaaattattcatggtaaaatttactctaaat |
7523499 |
T |
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| Q |
110 |
attagatatgccagcaacacacaatttccttttatgtcaatttgtatcaattgtcatatcttagatgtatacgtgatttttcttctattgttacatttca |
209 |
Q |
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| T |
7523498 |
attagatatgctagcaacacacaatttccttttatgtcaatttgtatcaattgtcatatcttaaatgcatacgtgatttttcttctattgttacatttca |
7523399 |
T |
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| Q |
210 |
tcatggatattccttggttgtttaatttccttcaagataac |
250 |
Q |
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| T |
7523398 |
tcatggatattctttggttgtttaatttccttcaagataac |
7523358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 7522346 - 7522489
Alignment:
| Q |
107 |
aatattagatatgccagcaacacacaatttccttttatgtcaatttgtatcaattgtcatatcttagatgtatacgtgatttttcttctattgttacatt |
206 |
Q |
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| T |
7522346 |
aatattagatatgctagcaacacacaatttccttt-aggtcaatgtgtatcaattgtcatatcttaaatgcatatgtgattcttcttctcatgttacatt |
7522444 |
T |
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| Q |
207 |
tcatc--atggatattccttggttgtttaatttccttcaagataa |
249 |
Q |
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| T |
7522445 |
tcatcatatggatattcctttgttgctcaatttccttcaagataa |
7522489 |
T |
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