View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_31 (Length: 250)
Name: NF9856_low_31
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_31 |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 28519061 - 28519298
Alignment:
| Q |
13 |
aaggtgtgttccaaataggaatcaaggagccatcaccaattctccaacggtatcaattctacaaaaaattttgagatgtctagatgctacaccatacata |
112 |
Q |
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| T |
28519061 |
aaggtgtgttccaaataggaatcaaggagccatcaccaattctccaacggtatcaattctacaacaatttttgagatgtctagatgctacaccatacata |
28519160 |
T |
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| Q |
113 |
attaagagtatgtctcaaagacgattccaaaaaatccccaattgaaaaatatttaactttgaagattcttgaaaccatagaaccgaggttggttaagaaa |
212 |
Q |
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| T |
28519161 |
attaagagtatgtctcaaagacaatcccaaaaaatccccaattagaaaatatttagctttgaagattcttgaaaccatagaaccgaggttggttaagaaa |
28519260 |
T |
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| Q |
213 |
ttccaaccttgcttccctaacatttccaaattaaaacc |
250 |
Q |
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| T |
28519261 |
ttccaaccttgcttccttaaaatttccaaattaaaacc |
28519298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 11738786 - 11738940
Alignment:
| Q |
96 |
atgctacaccatacataattaagagtatgtctcaaagacgattccaaaaaatccccaattgaaaaatatttaactttgaagattcttgaaaccatagaac |
195 |
Q |
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| T |
11738786 |
atgctactccaaacataactaggattgtgtcccaaagacgctcctaaaaaattcccattcgaaaagtatttagctttgaagattcgagagaccatagcat |
11738885 |
T |
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| Q |
196 |
cgaggttggttaagaaattccaaccttgcttccctaacatttccaaattaaaacc |
250 |
Q |
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| T |
11738886 |
ccgggttggttaagaaatttcaacattgtttccccaacattgctaaattgaaacc |
11738940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 250
Target Start/End: Complemental strand, 9679072 - 9678918
Alignment:
| Q |
96 |
atgctacaccatacataattaagagtatgtctcaaagacgattccaaaaaatccccaattgaaaaatatttaactttgaagattcttgaaaccatagaac |
195 |
Q |
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| T |
9679072 |
atgctacgccaaacataattaggattgtgtcccaaagacgattctaaaaaattcccattcgaaaagtatttagcttggaagatttgagagaccatagcat |
9678973 |
T |
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| Q |
196 |
cgaggttggttaagaaattccaaccttgcttccctaacatttccaaattaaaacc |
250 |
Q |
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| T |
9678972 |
ccgggttggttaagaaattccaaccttgtttacccaacattgctaaattgaaacc |
9678918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 41688495 - 41688628
Alignment:
| Q |
96 |
atgctacaccatacataattaagagtatgtctcaaagacgattccaaaaaatccccaattgaaaaatatttaactttgaagattcttgaaaccatagaac |
195 |
Q |
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| T |
41688495 |
atgctacgccaaacataactaggattgtgtcccaaagacgctcctaaaaaattctcattcgtaaagtatttagctttgaagattcgagagaccatagcat |
41688594 |
T |
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| Q |
196 |
cgaggttggttaagaaattccaaccttgcttccc |
229 |
Q |
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| T |
41688595 |
ccgggttggttaagaaattccaacattgtttccc |
41688628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 13011552 - 13011661
Alignment:
| Q |
141 |
aaaaaatccccaattgaaaaatatttaactttgaagattcttgaaaccatagaaccgaggttggttaagaaattccaaccttgcttccctaacatttcca |
240 |
Q |
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| T |
13011552 |
aaaaaatccccatttgggaagtatttagctttggagattctagacaccatagcatcagggttggtcaagaaattccaaccttgtttccctaacattgcca |
13011651 |
T |
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| Q |
241 |
aattaaaacc |
250 |
Q |
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| T |
13011652 |
agttgaaacc |
13011661 |
T |
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