View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_33 (Length: 250)
Name: NF9856_low_33
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 31524366 - 31524610
Alignment:
| Q |
1 |
cataaattatagataggaaaatattgaaagtggagtgaaaagaaaagacatggatgcaatgttatgttacctctaagccttgaacttcaatcctaccctt |
100 |
Q |
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| T |
31524366 |
cataaattatagataggaaaatattgaaagtggagtgaaaagaaaagacatggatgcaatgttatgttacctctaagccttgaacttcaatcctaccctt |
31524465 |
T |
|
| Q |
101 |
ggaaggccatggagatggcggtcggttatcctccataatggcaggaggttcggctggaatgtcgatgaactgcttgattctttcaaccgagattatgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524466 |
ggaaggccatggagatggcggtcggttatcctccataatggcaggaggttcggctggaatgtcgatgaactgcttgattctttcaaccgagattatgttg |
31524565 |
T |
|
| Q |
201 |
tttgataaggtggaaaaccatctagtccaaaatatctgtgctcct |
245 |
Q |
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| T |
31524566 |
tttgataaggtggaaaaccatctagtccaaaatatctgggctcct |
31524610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 64 - 235
Target Start/End: Complemental strand, 5315987 - 5315816
Alignment:
| Q |
64 |
atgttacctctaagccttgaacttcaatcctacccttggaaggccatggagatggcggtcggttatcctccataatggcaggaggttcggctggaatgtc |
163 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||| ||| || ||||| |||||||||| |||||||||||| || ||||| || |
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| T |
5315987 |
atgttacctctaatccttgaacatcaatcctacccttggaaggccatgaagaagggggtcgattatcctccacaatggcaggaggctcaaatggaacgtg |
5315888 |
T |
|
| Q |
164 |
gatgaactgcttgattctttcaaccgagattatgttgtttgataaggtggaaaaccatctagtccaaaatat |
235 |
Q |
| |
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| T |
5315887 |
aatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatat |
5315816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 5287957 - 5288135
Alignment:
| Q |
67 |
ttacctctaagccttgaacttcaatcctacccttggaaggccatggagatggcggtcggttatcctccataatggcaggaggttcggctggaatgtcgat |
166 |
Q |
| |
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|||||||||||||||||| |||||| | |||||||||||||||| |||||| |||||||||| |||| ||||||||| ||||| ||||| |||| || |
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| T |
5287957 |
ttacctctaagccttgaagatcaatcttgcccttggaaggccatgaagatggtggtcggttattatccacaatggcaggcggttcagctggtatgtgaat |
5288056 |
T |
|
| Q |
167 |
gaactgcttgattctttcaaccgagattatgttgtttgataaggtggaaaaccatctagtccaaaatatctgtgctcct |
245 |
Q |
| |
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||| || |||||||||||||| ||||| || | |||||||||| |||||||||||||| |||||||||| || |||||| |
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| T |
5288057 |
gaattggttgattctttcaacggagataatatggtttgataagttggaaaaccatctactccaaaatatttgggctcct |
5288135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 67 - 244
Target Start/End: Complemental strand, 15127847 - 15127670
Alignment:
| Q |
67 |
ttacctctaagccttgaacttcaatcctacccttggaaggccatggagatggcggtcggttatcctccataatggcaggaggttcggctggaatgtcgat |
166 |
Q |
| |
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|||||||||| ||||||| |||||| | |||||||||||||||| ||||||||| ||||||| |||| |||||||||||| || ||||| |||| || |
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| T |
15127847 |
ttacctctaacccttgaagatcaatcttgcccttggaaggccatgaagatggcggccggttattatccacaatggcaggaggctcagctggtatgtgaat |
15127748 |
T |
|
| Q |
167 |
gaactgcttgattctttcaaccgagattatgttgtttgataaggtggaaaaccatctagtccaaaatatctgtgctcc |
244 |
Q |
| |
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||| ||||||||||||||||| ||||| || | ||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
15127747 |
gaattgcttgattctttcaacagagatgatataatttgataagttggaaaaccatctagtccaaaatatttgggctcc |
15127670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 14947189 - 14947367
Alignment:
| Q |
67 |
ttacctctaagccttgaacttcaatcctacccttggaaggccatggagatggcggtcggttatcctccataatggcaggaggttcggctggaatgtcgat |
166 |
Q |
| |
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|||||||||||||||||| |||||| | |||||||||||||||| |||||| |||||||||| |||| || ||||||||| || ||||| |||| || |
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| T |
14947189 |
ttacctctaagccttgaagatcaatcttgcccttggaaggccatgaagatggaggtcggttatgatccacaacggcaggaggctcagctggtatgttaat |
14947288 |
T |
|
| Q |
167 |
gaactgcttgattctttcaaccgagattatgttgtttgataaggtggaaaaccatctagtccaaaatatctgtgctcct |
245 |
Q |
| |
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||| || |||||||||||||| ||||| || | ||||||||| | ||||||||||||||||||||||| || |||||| |
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| T |
14947289 |
gaattgtttgattctttcaacagagataatatggtttgataaatttgaaaaccatctagtccaaaatatttgggctcct |
14947367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 5280230 - 5280397
Alignment:
| Q |
67 |
ttacctctaagccttgaacttcaatcctacccttggaaggccatggagatggcggtcggttatcctccataatggcaggaggttcggctggaatgtcgat |
166 |
Q |
| |
|
||||||| |||||||| | |||||| | |||||||||||||| | | |||| |||||||||| |||| |||||| ||||| || ||||| |||| || |
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| T |
5280230 |
ttacctccaagccttggagatcaatcttgcccttggaaggccacgaatatggaggtcggttattatccacaatggcgggaggctcagctggtatgtgaat |
5280329 |
T |
|
| Q |
167 |
gaactgcttgattctttcaaccgagattatgttgtttgataaggtggaaaaccatctagtccaaaata |
234 |
Q |
| |
|
||| ||||||||||||||||| ||||| || | |||||| ||| || |||||||| ||||||||||| |
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|
| T |
5280330 |
gaattgcttgattctttcaacggagataatatagtttgacaagttgttaaaccatcgagtccaaaata |
5280397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 5309275 - 5309097
Alignment:
| Q |
67 |
ttacctctaagccttgaacttcaatcctacccttggaaggccatggagatggcggtcggttatcctccataatggcaggaggttcggctggaatgtcgat |
166 |
Q |
| |
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||||||||||||||| || ||||| | ||||| |||||||||| |||||| ||||| |||| |||| ||||| ||||| | ||||| |||| || |
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| T |
5309275 |
ttacctctaagccttcaagatcaatttttcccttagaaggccatgaagatggaggtcgattattatccacaatggagggaggcttagctggtatgtgaat |
5309176 |
T |
|
| Q |
167 |
gaactgcttgattctttcaaccgagattatgttgtttgataaggtggaaaaccatctagtccaaaatatctgtgctcct |
245 |
Q |
| |
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||| || ||||||||||| || ||||| || | |||||||||| |||||||||||| |||||||||||| || |||||| |
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| T |
5309175 |
gaattggttgattctttcgacagagataatatagtttgataagttggaaaaccatcgagtccaaaatatttgggctcct |
5309097 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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