View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_35 (Length: 243)
Name: NF9856_low_35
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7523352 - 7523128
Alignment:
| Q |
1 |
tgctctcattccttggagacagatatacgatgtttaagtatatctctcatatatcagatttgtgaaaacaaaaactcatatatctcatatttagnnnnnn |
100 |
Q |
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| T |
7523352 |
tgctctcattccttggagacagatatatgatgtttaagtatatctctcatatatcagatttgtgaaaacaaaaactcatat--ctcatatttagtttttt |
7523255 |
T |
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| Q |
101 |
nnnnnncacatgttttacatggttaaaatccaactaatcaatgtattttattcatttattttttgaacttttccttatcatagacatagttatttttcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7523254 |
atttttcacatgttttacatggttaaaatccaactaatcaatgtattttattcatttattttttgaacttttccttatcatagacatagttatttttcta |
7523155 |
T |
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| Q |
201 |
caagcacagtgagaatgtattcttgat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
7523154 |
caagcacagtgagaatgtattcttgat |
7523128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 7522515 - 7522651
Alignment:
| Q |
14 |
tggagacagatatacgatgtttaagtatatctc--tcatatatcagatttgtgaaaacaaaaactcatatatctcatatttagnnnnnnnnnnnncacat |
111 |
Q |
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|||| ||| |||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| | ||||| |
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| T |
7522515 |
tggaaacaaatatacgatgttgaggtatatctctctcatatattagatttgtgaaaacaaaaactcacatatctcatattttgttttttatttttcacat |
7522614 |
T |
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| Q |
112 |
gttttacatggttaaaatccaactaatcaatgtatttt |
149 |
Q |
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| T |
7522615 |
g-tttacatggttaaaatccaacaaatgaatgtatttt |
7522651 |
T |
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