View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_36 (Length: 243)
Name: NF9856_low_36
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 28519282 - 28519514
Alignment:
| Q |
2 |
atttccaaattaaaaccatggatgatctgaaaaccaat--------gttccttcctcatagtaagcttttcccaacacatcaatataatccctcttctat |
93 |
Q |
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| T |
28519282 |
atttccaaattaaaaccatggatgatctgaaaacccatttatcctcgttccttcctcatagtaagattttcccaacacatcaatctaatccctcttctat |
28519381 |
T |
|
| Q |
94 |
tttcacctttttcatcccaccaaaaagaattaagcatcatttctatatgttcctctatagacgtttgaaggaggaatacactcatgcaataagatggaat |
193 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
28519382 |
tttcacctttttcatcccaccaacttgaattaagcatcatctctatatgttcctctatagacgttggaaggaggaatacactcatgcaataagataaaat |
28519481 |
T |
|
| Q |
194 |
agtttgagcaactggcttgatgaaaacctcttt |
226 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28519482 |
agtttgagcaactggcttgatgaaaacctcttt |
28519514 |
T |
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