View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_4 (Length: 491)
Name: NF9856_low_4
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 15801960 - 15802419
Alignment:
| Q |
19 |
atcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15801960 |
atcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtca |
15802059 |
T |
|
| Q |
119 |
cctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgctacctatgatattatggttagatattgtgcctaagtcagaatctgagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
15802060 |
cctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgctacctatgatgttgtggttagatattgtgcctaagtcagaatctgagt |
15802159 |
T |
|
| Q |
219 |
ttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15802160 |
ttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctcgcaaatactgtacaagtaaaatggtgattg |
15802259 |
T |
|
| Q |
319 |
tgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgttttgacgttttcatggttgaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
15802260 |
tgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagcttagaaaccttgtagtacaagtcatgttgtgttttgacattttcatggttgaa |
15802359 |
T |
|
| Q |
419 |
nnnnnnncagtaaccattccaagaattttgttggacataacaatttctgtattttgttct |
478 |
Q |
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| T |
15802360 |
tttttttcattaaccattccaagaattttattggacataacaatttctgtattttgttct |
15802419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 15794160 - 15794559
Alignment:
| Q |
18 |
aatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtc |
117 |
Q |
| |
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||||||||||||||| ||| || |||||||| |||||| || || || ||||||||| ||||||||||||| ||| | |||||||||||||||||||| |
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| T |
15794160 |
aatcataccatatcatagctgagacactgttgggacaatattttgcaatatctctaacaacagtgttgatacaaaattgacagaaacttcctgtgatgtc |
15794259 |
T |
|
| Q |
118 |
acctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgctacctatgatattatggttagatattgtgcctaagtcagaatctgag |
217 |
Q |
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| T |
15794260 |
accccgacaatcatagaacccataaaccgtatcatgatcattgttgttgttgctaactatggtgttgtggttagatactgtttgtttggcagaatccgat |
15794359 |
T |
|
| Q |
218 |
tttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgatt |
317 |
Q |
| |
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| T |
15794360 |
gttgtccatgacagaaagttgttaacgttggattggtacgaagcgttgagtattttttgagttgaattctcgcaaacactatacatataaaatggtgatt |
15794459 |
T |
|
| Q |
318 |
gtgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgttttgacgttttcatggttga |
417 |
Q |
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||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||||| |
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| T |
15794460 |
gtgcagttgttaggatcatgaagaggaggagattaaggagaatgaagcttagaaaccttgtagtataagtcatgttgtgtggtgacgttttcattgttga |
15794559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 15807579 - 15807958
Alignment:
| Q |
19 |
atcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtca |
118 |
Q |
| |
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|||||||||||| | |||||| |||||||| |||||| || || |||||||||| |||||||||||| || ||| | |||||||||| |||| | | |
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| T |
15807579 |
atcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgcaaaattgacagaaacttcttgtgttagga |
15807678 |
T |
|
| Q |
119 |
cctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgctacctatgatattatggttagatattgtgcctaagtcagaatctgagt |
218 |
Q |
| |
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||| ||||| | || ||||||||||| | |||| || || ||||||||||||||||||| | || |||||||||| || ||| | ||||||| || |
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| T |
15807679 |
cctagacaatcatagaacccataaaccgtatcattataattgctgttgttgctacctatggtgttgtggttagatacagttcctttggcagaatccgatg |
15807778 |
T |
|
| Q |
219 |
ttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattg |
318 |
Q |
| |
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| T |
15807779 |
ttgtccatgacaaaaagttgttaacgttggattgatatgaagtgttgactgttttttcagtagaattctggcaataactgtacatgtaaaatggtgattg |
15807878 |
T |
|
| Q |
319 |
tgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgtt |
398 |
Q |
| |
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||| | ||||| |||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15807879 |
cgcattcgttagcgtcatgaagaggaagtgatgaagtagaatgaagcttagaaaccttgtagtacaagtcatgttgtgtt |
15807958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 15815673 - 15815823
Alignment:
| Q |
240 |
taacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaa |
339 |
Q |
| |
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||||||||||| ||||||| ||||| |||||||||||||||||||||||||| | | || |||| |||||||||||||| |||||| | |||| |
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| T |
15815673 |
taacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacctgtaatatggtgattgtgcatttgttaag---gtgaa |
15815769 |
T |
|
| Q |
340 |
gaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgtt |
393 |
Q |
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||| || | |||||| | ||||||||||||||||||| ||||||||||||||| |
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| T |
15815770 |
gagaaaaatatgaagtagaatgaagcttagaaaccttgcagtacaagtcatgtt |
15815823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 15815441 - 15815562
Alignment:
| Q |
20 |
tcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcac |
119 |
Q |
| |
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||||||||||||| |||||| || | || ||||||| ||||||||| |||||||||||| ||||||||| ||| | |||||||||||||| | ||||| |
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| T |
15815441 |
tcataccatatcatagccgagacgccattgggacaacattgagcgatcgctctaacagcagcgttgatacaaaattgacagaaacttcctgttacgtcac |
15815540 |
T |
|
| Q |
120 |
ctcgacaaccgtataacccata |
141 |
Q |
| |
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| |||||| |||| || ||||| |
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| T |
15815541 |
cacgacaatcgtagaatccata |
15815562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 15700230 - 15700313
Alignment:
| Q |
44 |
ctgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaa |
127 |
Q |
| |
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|||||| ||||||||||||| |||||| | ||||||||||||||||| ||| | |||||||||||||||| |||| | |||||| |
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| T |
15700230 |
ctgttaagacaacgttgagcaatttctttgacagcagtgttgatacaaaattgacagaaacttcctgtgacgtcagcccgacaa |
15700313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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