View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_45 (Length: 202)
Name: NF9856_low_45
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 42249512 - 42249345
Alignment:
| Q |
19 |
gtgatcggtttgactactgtttttgggaatgctcaaactgaagatgctacacgtaatgcattgcttttggtatgtgnnnnnnnnccttccagaattagaa |
118 |
Q |
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| T |
42249512 |
gtgatcggtttgactactgtttttgggaatgctcaaactgaagatgctacacgtaatgcattgcttttggtatgtgttttttt-ccttccagaattagaa |
42249414 |
T |
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| Q |
119 |
accatgtcaatcatctataagtcctagctcatttgacaaatgccaatatggttaggcttgatatctgtg |
187 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42249413 |
accatgtcaatcatctataagtcctagctcatatgacaaatgccaatatggttaggcttgatatctgtg |
42249345 |
T |
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