View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_5 (Length: 454)
Name: NF9856_low_5
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 51122046 - 51121626
Alignment:
| Q |
17 |
gcaccatatactgataagatgaaatgacataccagacaacatcaaggaaagatttacttgcaaagtgaaaaggcaagacatttaaaacacaatcactata |
116 |
Q |
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| T |
51122046 |
gcaccatatactgataagatgaaatgacataccagacaacatcaaggaaagatttacctgcaaagtgaaaaggcaagacatttaaaacacaatcactata |
51121947 |
T |
|
| Q |
117 |
caaaggagaaaacattctctaaatttttcctattctaatcatgaaaaatgannnnnnnnnnnnnnnnnnnnnnngaccttcttggccactcaaagtttat |
216 |
Q |
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| T |
51121946 |
caaattagaaaacattctctaaatttttcctattctaatcatgaaaaatgatttttctatttttattgttttttgaccttcttggccactaaaagtttat |
51121847 |
T |
|
| Q |
217 |
ttcacttataaccacatacgtttagttacaagtgaccnnnnnnncttttcaaatttctaatgattgatgcaagtgaaattttttatgtaggagaatatgt |
316 |
Q |
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| T |
51121846 |
ttcacttataaccacatatgtttagttacaagtgacctttttttcttttcaaatttctaatgattgatgcaagtgaaattttttatgtaggagaatatgt |
51121747 |
T |
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| Q |
317 |
atatttccattccattgtttggtagatttgatcatatgtagaagaatatgtaatcaatattgattggtgtatattccaaagaaaaagaccaggtctagta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51121746 |
atatttccattccattgtttggtagatttgatcatatgtagaagaatatgtaatcaatattgattggtgtatattccaaagaaaaagaccaggtctagta |
51121647 |
T |
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| Q |
417 |
cattacgtcacatgttgtaat |
437 |
Q |
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| T |
51121646 |
cattacgtcacatgttgtaat |
51121626 |
T |
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Back To:
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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 45246042 - 45245966
Alignment:
| Q |
62 |
ggaaagatttacttgcaaagtgaaaaggcaagacatttaaaacacaatcactatacaaaggagaaaacattctctaa |
138 |
Q |
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| T |
45246042 |
ggaaacatatacctgcagagtgaaaaggcaagacatttaaaacacaatcaatatacaaaagagaaaacattctctaa |
45245966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 48886017 - 48885966
Alignment:
| Q |
81 |
gtgaaaaggcaagacatttaaaacacaatcactatacaaaggagaaaacatt |
132 |
Q |
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| T |
48886017 |
gtgaaaaggaaagacatttaaaagacaatcactatacaaaggagaaaacatt |
48885966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 39016681 - 39016718
Alignment:
| Q |
27 |
ctgataagatgaaatgacataccagacaacatcaagga |
64 |
Q |
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| T |
39016681 |
ctgataagatgaaatgacataccagacaacatcaagga |
39016718 |
T |
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