View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_low_6 (Length: 448)
Name: NF9856_low_6
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 496732 - 497010
Alignment:
| Q |
12 |
agagatatccaaatgaagaccaaagttacactaagaatgtaagttttttacttttggattaattatagtataagaacaatcaattttttactaagataac |
111 |
Q |
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| T |
496732 |
agagatatccaaatgaagaccaaagttacactaagaatgtaagttttttacttttggattaactatagtataagaacaatcaattttttactaagataac |
496831 |
T |
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| Q |
112 |
ttatatataaaagctcttacagactaaagagataaatataaaatctggtttgaattattatgataaatacacacatatttgatgttgtgtttttgtatct |
211 |
Q |
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| T |
496832 |
ttatatataaaagctcttacagactaaagagataaatataaaatctggtttgaattattatgataaatacacacatatttgatgttgtgtttttgtatc- |
496930 |
T |
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| Q |
212 |
ttacatcttaaatctagaacatgtatgatttggatattttccaatcggtttacactactttgtggtaaaacacaacttta |
291 |
Q |
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| T |
496931 |
ttacatcttaaatctagaacatgtatgatttggatattttccaatcggtttacactactttgtggtaaaacataacttta |
497010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 500655 - 500707
Alignment:
| Q |
63 |
ttttggattaattatagtataagaacaatcaa--ttttttactaagataactt |
113 |
Q |
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| T |
500655 |
ttttggattagctaaagtataagaacaatcaattttttttactaagataactt |
500707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 29458360 - 29458392
Alignment:
| Q |
353 |
taatttgagaaaatggaagagatcgaatgtaat |
385 |
Q |
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| T |
29458360 |
taatttgagaaaatggaagagattgaatgtaat |
29458392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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