View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_high_13 (Length: 316)
Name: NF9857_high_13
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 48697513 - 48697206
Alignment:
| Q |
1 |
tcaactgaacatgttccttttgatatgttgtcattggaagtagagggaaatgagaatgaacactcggaaaatccacaaaatttgtgcgacaataacttgt |
100 |
Q |
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| T |
48697513 |
tcaactgaacatgttccttttgatatgttgtcattggaagtagagggaaatgagaatgaactctcagaaaatccacaaaatttgtgcgacaataacttgt |
48697414 |
T |
|
| Q |
101 |
tgtgagttctgttagctccaccggaagagactatatggcctaaattgggaggttggaattggaagaaaccttctgttgttgtatcatcagaagttgcatc |
200 |
Q |
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| T |
48697413 |
tgtgagttctgtttgctccaccggaagagactatatggcctaaattgggaggttggaattggaagaaaccttctgttgttgtatcatcagaagttgcatc |
48697314 |
T |
|
| Q |
201 |
attatgctccatgtctgagaattcatctgagtaatcagaactatcgcaagcgatcgagaccttgtatggaagtatgaatgtgaaggtagaaccattttgt |
300 |
Q |
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| T |
48697313 |
attatgctccatgtctgagaattcatctgagtaatcagaactatcgcaagcgatcgagaccttgtatggaagtatgaatgtgaaggtagaaccattttgt |
48697214 |
T |
|
| Q |
301 |
tctctgct |
308 |
Q |
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| T |
48697213 |
tctttgct |
48697206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 3453587 - 3453622
Alignment:
| Q |
259 |
accttgtatggaagtatgaatgtgaaggtagaacca |
294 |
Q |
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| T |
3453587 |
accttgtatggtagtatgaatgtgaaggtagaacca |
3453622 |
T |
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