View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_high_2 (Length: 600)
Name: NF9857_high_2
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_high_2 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 381 - 600
Target Start/End: Original strand, 8176040 - 8176258
Alignment:
| Q |
381 |
gtcaaaacccaccggaaggtcgcaaaaagtctcacgggaagctttattcaacggtagcacaaggaagtatttatcttttaacaatggcagaga-ttagag |
479 |
Q |
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| T |
8176040 |
gtcaaaacccaccggtaggtcgcaaaaagtctcacgggaagctttattcaacggtagcacaaggaagtatttatcttttaacaatggcagagagttagag |
8176139 |
T |
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| Q |
480 |
ttaacttcaaagaaattcttgtcttgccttaaagacacaaatccatgtcggcgtccagagccagtctctgcccgctgcacacataacagatgaaaaacaa |
579 |
Q |
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| T |
8176140 |
ttaacttcaaagaaattcttgtcttgccttaaag--acaaacctatgtgggcggcaagagccagtctctgcccgctgcacacataacagatgaaaaacaa |
8176237 |
T |
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| Q |
580 |
aggaatatcaaaacgcatcat |
600 |
Q |
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| T |
8176238 |
aggaatatcaaaacgcatcat |
8176258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 8173150 - 8173341
Alignment:
| Q |
28 |
ttgaggctcatgatgccataacaaa-----caaatagaagtgtgagaatagattgagaaaaaatatttgaacaatgagcgacaatattttgatttctcat |
122 |
Q |
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| T |
8173150 |
ttgaggctcatgatgccataacaaattaaacaaatagaagtgtgagaatagattgagaaaaaatatttgaacgatgagcgataatattttgatttctcat |
8173249 |
T |
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| Q |
123 |
ctaagtgatatgtggcatcatatatgtatttaaagtgatta-tttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
213 |
Q |
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| T |
8173250 |
ctaagtgatatgtggcatcatatatgtatttaaaggggttattttttagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
8173341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 212 - 372
Target Start/End: Original strand, 8174717 - 8174878
Alignment:
| Q |
212 |
aaataagcaaagcacttaacaaaattcactcctaactagacaacttttctataatcattgttcacaacaagcaagaacaactcagtttcaataagtctag |
311 |
Q |
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| T |
8174717 |
aaataagcaaagcacttaacaaaattcactcctaaatagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
8174816 |
T |
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| Q |
312 |
gcttgttaaccttgatccatcaactttgtaagagtcatccaagccaa-tcatccataattga |
372 |
Q |
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| T |
8174817 |
gcttgttaaccttgatccatcaactttgcaagagtcatccaagccaatttatccataattga |
8174878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 48775334 - 48775276
Alignment:
| Q |
155 |
aagtgattatttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
213 |
Q |
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| T |
48775334 |
aagtgattatttttagattcagcttattcgaacaacacaaacgagaagttgaccattaa |
48775276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 30534595 - 30534543
Alignment:
| Q |
154 |
aaagtgattatttatagattatgcttatttgaacaacgcacatgagaagttga |
206 |
Q |
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| T |
30534595 |
aaagtgattatttttagattatgcttatttgaataacgcaaatgagaagttga |
30534543 |
T |
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