View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_high_24 (Length: 241)
Name: NF9857_high_24
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_high_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 3618997 - 3619217
Alignment:
| Q |
19 |
aacgcaatagcacggctatagctgctccttaaccaaactttatactaaatcgcgtattgcatagctataacgattagttaaaattcatatatacatatca |
118 |
Q |
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| T |
3618997 |
aacgcaatagcacggctatagctgctccttaaccaaactttatactaaatcgcgtattgcataacgataacgattagttaaaattcatat--acatatca |
3619094 |
T |
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| Q |
119 |
aaccaataaataacctaaacaagataaatctcaatttaaagaatttcatgaattccgattgaaaaaataattcggaattacaataaacaccctaggattc |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |
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| T |
3619095 |
aaccaataaataaactaaacaagataaatctcaatttaaagaatttcatgaattccgattgaaaaaatatttcggaattacaataaacacccaaggtttc |
3619194 |
T |
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| Q |
219 |
tgagaattgaaataattcggttt |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
3619195 |
tgagaattgaaataattcggttt |
3619217 |
T |
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