View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_high_28 (Length: 232)
Name: NF9857_high_28
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_high_28 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 26639997 - 26640162
Alignment:
| Q |
67 |
taactaaggatcattgacccaataatggagctagaagcagataccatgggcctgcaattaatgcatatatagtatgatcactaagaaaattaatatacag |
166 |
Q |
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| T |
26639997 |
taactaaggatcattgacccaataatggagctagaagcagataccatgggcctgcaattaatgcatatatagtatgatcactaagaaaattaatatacag |
26640096 |
T |
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| Q |
167 |
tctcataaattggttgctaaatgacaatagactggattgcttctcaattctcacccatgaaaattt |
232 |
Q |
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| T |
26640097 |
tctcataaattggttgctaaaggacaatagactggattgcttctcaattctcacccatgaaaattt |
26640162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 26631910 - 26632106
Alignment:
| Q |
12 |
ttctctggattgaaagcacatcttctcctaacaaatgtcttcacaaacagtgatttaactaaggatcattgacccaataatggagctagaagcagatacc |
111 |
Q |
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| T |
26631910 |
ttctctggattgaaagtg--tcttctcctaacaaatgtcttatcaaacagcgagttaactaaggatcattgacccaataatggagctagaagcaaaaacc |
26632007 |
T |
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| Q |
112 |
atgggcctgcaattaatgcatatatagtatgatcactaagaaaattaatatacagtctcataaattggttgctaaatgacaatagactggattgcttctc |
211 |
Q |
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| T |
26632008 |
atggg-ctgcaattaatgcatatatagtattatcactaagaaaattaat----agtctcataaattggctgctaaaggacaatagactggattggttctc |
26632102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 26700838 - 26700694
Alignment:
| Q |
19 |
gattgaaagcacatcttctcctaacaaatgtcttcacaaacagtgatttaactaaggatcattgacccaataatggagctagaagcagataccatgggcc |
118 |
Q |
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| T |
26700838 |
gattgaaagcgcttcttctcctaacaaatggcttcttaaacagtgagttaactaaggatcattgacccaataatggagctagaagcggatacaatgggcc |
26700739 |
T |
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| Q |
119 |
tgcaattaatgcatatatagtatgatcactaagaaaattaatata |
163 |
Q |
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| T |
26700738 |
tgcaattaatgcatatatagtatgatcactatgaaaattaatata |
26700694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 26616692 - 26616762
Alignment:
| Q |
159 |
atatacagtctcataaattggttgctaaatgacaatagactggattgcttctcaattctcacccatgaaaa |
229 |
Q |
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| T |
26616692 |
atatatagtctcataaattggttgctaaaggacaatagactggattggttctcaattctcacccatgaaaa |
26616762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 26652743 - 26652680
Alignment:
| Q |
165 |
agtctcataaattggttgctaaatgacaatagactggattgcttctcaattctcacccatgaaa |
228 |
Q |
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| T |
26652743 |
agtctcataaattggttgctaaaggacaaaagactggattggttctcaattctcacccatgaaa |
26652680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 26616598 - 26616661
Alignment:
| Q |
34 |
ttctcctaacaaatgtcttcacaaacagtgatttaactaaggatcattgacccaataatggagc |
97 |
Q |
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| T |
26616598 |
ttctcctaacaaatgtcttctcaaacagcgagttaactaaggatcattaacccaataatggagc |
26616661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 26622154 - 26622235
Alignment:
| Q |
149 |
aagaaaattaatatacagtctcataaattggttgctaaatgacaatagactggattgcttctcaattctcacccatgaaaattt |
232 |
Q |
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| T |
26622154 |
aagaaaattaatatatagtctcataatttggttactaaaggaca--agagtggattggttctcaattttcatccatgaaaattt |
26622235 |
T |
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