View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_high_29 (Length: 226)
Name: NF9857_high_29
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 5821140 - 5821278
Alignment:
| Q |
37 |
atatgatatatacagtttttt-gaattattttattaaaagttagtaagtggaaggaaaccaactgatattaaggccaaggagaatcaagtagctatattt |
135 |
Q |
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| T |
5821140 |
atatgatatatacagtttttttgaattgttttattaaaa-ttggtaagtggaaggaaaccaactgatcgtaaggccaaagataatcaagtagctatattt |
5821238 |
T |
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| Q |
136 |
gattgtgtttgggacttgtatagactaggaaagttgcttg |
175 |
Q |
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| T |
5821239 |
gattgtgtttgggacttgtatagactaggaaagttgcttg |
5821278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 5821296 - 5821333
Alignment:
| Q |
172 |
cttgggcacgtatttgatgaggaacaattggaatgttt |
209 |
Q |
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| T |
5821296 |
cttgggcacgtatttgatgaggaacaattggaacgttt |
5821333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 47871840 - 47871939
Alignment:
| Q |
76 |
ttagtaagtggaaggaaaccaactgatattaaggccaaggagaatcaagtagctatatttgattgtgtttgggacttgtatagactaggaaagttgcttg |
175 |
Q |
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| T |
47871840 |
ttagcaagtggaagaaaaccaattgatcgtaaggccaaggagggtcaagtggctatatttgatcgggtctgggacctttatagacttggaaggttgcttg |
47871939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 47873702 - 47873603
Alignment:
| Q |
76 |
ttagtaagtggaaggaaaccaactgatattaaggccaaggagaatcaagtagctatatttgattgtgtttgggacttgtatagactaggaaagttgcttg |
175 |
Q |
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| T |
47873702 |
ttagcaagtggaagaaaaccagttgatcttaatgccaaggaggatcaaatggctatatttgattgggtttgggagctttatagattaggaaggttgcttg |
47873603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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