View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_high_3 (Length: 599)
Name: NF9857_high_3
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 242 - 588
Target Start/End: Original strand, 13848047 - 13848393
Alignment:
| Q |
242 |
gtccctgtcgttgaaccaaagtggagccttttattcctaaaactgatcctaatacaatacagaatccaataaagtcgtgttaatgcaccaaaagaaccag |
341 |
Q |
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| T |
13848047 |
gtccctgttgttgaaccaaagtggagccttttattcctaaaactgatcctaatacaatacagaatccaataaagtcgtgttaatgcaccaaaagaatcag |
13848146 |
T |
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| Q |
342 |
ttctgttcttgattgctcaggagaagtagagacaattgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatt |
441 |
Q |
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| T |
13848147 |
ttttgttcttgaatgctcaggagaagtagagacaattgtaagggaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatt |
13848246 |
T |
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| Q |
442 |
tcacaagaataagggaacatgaaagtagaagatggaggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgta |
541 |
Q |
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| T |
13848247 |
tcacaagaataagggaacatgacagtagaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgta |
13848346 |
T |
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| Q |
542 |
ggtcatttcttgaggttcactcatggtccctttaatttgatgtccat |
588 |
Q |
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| T |
13848347 |
ggtcatttgttgaggttcactcatggtccctttaatttgaggtccat |
13848393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 13847889 - 13848034
Alignment:
| Q |
18 |
accattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaaaccattaaagataagcttgaacagcccacacaaacaaaatca |
117 |
Q |
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| T |
13847889 |
accattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaaaccattagagataagcttgaacag-ccacacaaacaaaatca |
13847987 |
T |
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| Q |
118 |
aatttttgttctttccacaatattaggttggttttatgagagtcact |
164 |
Q |
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| T |
13847988 |
aatttttgttctttccacaatattaggttggttttatgagagtcact |
13848034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 378 - 581
Target Start/End: Original strand, 34343782 - 34343982
Alignment:
| Q |
378 |
tgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgaaagtagaagatgga |
477 |
Q |
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| T |
34343782 |
tgtaagtgaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga |
34343881 |
T |
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| Q |
478 |
ggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaat |
577 |
Q |
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| T |
34343882 |
ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgact---tagtgtaggtcatttgttgaggttcactcatggtccctttaat |
34343978 |
T |
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| Q |
578 |
ttga |
581 |
Q |
| |
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|||| |
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| T |
34343979 |
ttga |
34343982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 34343645 - 34343781
Alignment:
| Q |
18 |
accattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaaaccattaaagataagcttgaacagcccacacaaacaaaatca |
117 |
Q |
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| T |
34343645 |
accattaaaaaattact---taaaatctagtgtttgaaataaaattggagcttgaaaaaccattagagataagcttgaacag-ccacacaaacaaaatca |
34343740 |
T |
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| Q |
118 |
aatttttgttctttccacaatattaggttggttttatgaga |
158 |
Q |
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| T |
34343741 |
aatttttgttctttccacaatattaggttggttttatgaga |
34343781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 579
Target Start/End: Original strand, 34823081 - 34823153
Alignment:
| Q |
506 |
gttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaattt |
579 |
Q |
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| T |
34823081 |
gtttttttttcctaaaagatatgaccggctagagcaggtcatttgttgaggttcactcatgat-cctttaattt |
34823153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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