View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_high_30 (Length: 222)

Name: NF9857_high_30
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_high_30
NF9857_high_30
[»] chr4 (32 HSPs)
chr4 (18-137)||(4957390-4957509)
chr4 (143-222)||(31364256-31364335)
chr4 (143-222)||(10058658-10058737)
chr4 (143-221)||(40969367-40969445)
chr4 (143-222)||(2017332-2017411)
chr4 (143-222)||(2521793-2521872)
chr4 (143-222)||(10715798-10715877)
chr4 (143-222)||(10929568-10929647)
chr4 (143-222)||(46645745-46645824)
chr4 (143-222)||(52373896-52373975)
chr4 (143-221)||(4728701-4728779)
chr4 (130-222)||(11826930-11827022)
chr4 (143-222)||(4552327-4552406)
chr4 (152-222)||(32006025-32006095)
chr4 (136-221)||(41972330-41972415)
chr4 (143-222)||(9003697-9003776)
chr4 (143-222)||(14044466-14044545)
chr4 (143-222)||(43003079-43003158)
chr4 (159-222)||(50100012-50100075)
chr4 (143-222)||(25237730-25237809)
chr4 (143-222)||(32828285-32828364)
chr4 (143-222)||(9694208-9694285)
chr4 (143-221)||(2576315-2576393)
chr4 (143-214)||(50384024-50384094)
chr4 (157-221)||(49745199-49745263)
chr4 (169-222)||(1585811-1585864)
chr4 (152-206)||(36947650-36947704)
chr4 (143-175)||(6017306-6017338)
chr4 (143-183)||(6255437-6255477)
chr4 (143-187)||(12211092-12211136)
chr4 (135-187)||(25182733-25182785)
chr4 (143-187)||(37236124-37236168)
[»] chr6 (18 HSPs)
chr6 (142-222)||(9696197-9696277)
chr6 (136-222)||(2941364-2941450)
chr6 (143-222)||(339480-339559)
chr6 (147-222)||(10397708-10397783)
chr6 (144-222)||(1780939-1781017)
chr6 (152-222)||(34248917-34248987)
chr6 (136-221)||(28614292-28614377)
chr6 (143-222)||(9046810-9046889)
chr6 (143-222)||(14938817-14938896)
chr6 (143-221)||(15122186-15122264)
chr6 (143-221)||(31188207-31188285)
chr6 (145-222)||(23663656-23663733)
chr6 (143-221)||(31200051-31200130)
chr6 (143-222)||(2960814-2960893)
chr6 (143-222)||(15529088-15529167)
chr6 (147-222)||(2836066-2836141)
chr6 (143-222)||(34188940-34189019)
chr6 (143-187)||(3051130-3051174)
[»] chr8 (13 HSPs)
chr8 (143-222)||(36406384-36406463)
chr8 (143-222)||(35384260-35384339)
chr8 (143-222)||(38214867-38214946)
chr8 (144-221)||(27321758-27321835)
chr8 (147-222)||(34282759-34282834)
chr8 (144-222)||(24965153-24965231)
chr8 (143-222)||(3383914-3383993)
chr8 (134-221)||(28928202-28928289)
chr8 (152-221)||(13243273-13243342)
chr8 (143-187)||(21958779-21958823)
chr8 (145-187)||(10014318-10014360)
chr8 (145-186)||(30791358-30791399)
chr8 (143-187)||(5637574-5637618)
[»] chr3 (19 HSPs)
chr3 (143-222)||(37516768-37516847)
chr3 (143-222)||(26370937-26371016)
chr3 (144-222)||(25391741-25391819)
chr3 (143-222)||(14461212-14461291)
chr3 (143-222)||(28311424-28311503)
chr3 (143-222)||(41218250-41218329)
chr3 (143-222)||(43700088-43700167)
chr3 (143-221)||(33178987-33179065)
chr3 (143-222)||(12909975-12910052)
chr3 (143-222)||(7501103-7501182)
chr3 (143-222)||(53987978-53988058)
chr3 (143-222)||(26278477-26278556)
chr3 (143-222)||(53652045-53652124)
chr3 (143-222)||(44047731-44047809)
chr3 (143-222)||(41358516-41358593)
chr3 (145-186)||(31989295-31989336)
chr3 (149-195)||(35077641-35077687)
chr3 (130-187)||(6891511-6891568)
chr3 (143-187)||(51408473-51408517)
[»] chr2 (22 HSPs)
chr2 (143-222)||(41114764-41114843)
chr2 (143-222)||(17148938-17149017)
chr2 (143-222)||(29257508-29257587)
chr2 (152-222)||(2475948-2476018)
chr2 (143-222)||(303986-304065)
chr2 (143-222)||(22572616-22572695)
chr2 (143-222)||(41010654-41010733)
chr2 (143-221)||(13203910-13203988)
chr2 (155-222)||(18299049-18299116)
chr2 (143-222)||(17249472-17249551)
chr2 (143-221)||(16220923-16221001)
chr2 (143-222)||(6799780-6799859)
chr2 (143-221)||(12000700-12000778)
chr2 (148-222)||(33909246-33909320)
chr2 (143-222)||(25563114-25563193)
chr2 (171-222)||(45444376-45444427)
chr2 (172-221)||(15651384-15651433)
chr2 (143-183)||(26655693-26655733)
chr2 (143-187)||(35649541-35649585)
chr2 (143-187)||(1955096-1955140)
chr2 (143-187)||(18425820-18425864)
chr2 (143-187)||(42755577-42755621)
[»] chr1 (23 HSPs)
chr1 (143-222)||(14727471-14727550)
chr1 (143-222)||(33468866-33468945)
chr1 (143-222)||(25007605-25007684)
chr1 (143-222)||(37153885-37153964)
chr1 (136-221)||(1428307-1428392)
chr1 (143-222)||(31844536-31844615)
chr1 (143-222)||(44305553-44305632)
chr1 (144-222)||(9527198-9527276)
chr1 (143-222)||(4774113-4774192)
chr1 (143-222)||(49898529-49898608)
chr1 (147-222)||(6331806-6331881)
chr1 (143-222)||(8239413-8239492)
chr1 (143-222)||(27460820-27460898)
chr1 (143-222)||(34459262-34459341)
chr1 (143-222)||(24646189-24646268)
chr1 (152-222)||(4641941-4642011)
chr1 (143-222)||(27583912-27583987)
chr1 (146-214)||(25011435-25011503)
chr1 (144-222)||(6801980-6802058)
chr1 (143-222)||(24745548-24745625)
chr1 (143-187)||(17875579-17875623)
chr1 (143-187)||(3830102-3830146)
chr1 (143-187)||(11957311-11957355)
[»] chr7 (22 HSPs)
chr7 (152-222)||(26722863-26722933)
chr7 (152-222)||(4843461-4843531)
chr7 (143-222)||(3012463-3012542)
chr7 (143-222)||(22206581-22206660)
chr7 (143-222)||(22228079-22228158)
chr7 (143-222)||(28693898-28693977)
chr7 (143-222)||(35300323-35300402)
chr7 (150-222)||(5991322-5991394)
chr7 (152-217)||(41759531-41759596)
chr7 (143-222)||(7873115-7873194)
chr7 (143-222)||(21932637-21932716)
chr7 (143-222)||(25688106-25688185)
chr7 (143-221)||(814868-814946)
chr7 (148-221)||(42439462-42439535)
chr7 (131-222)||(23704352-23704443)
chr7 (143-222)||(30852451-30852530)
chr7 (142-222)||(38128875-38128955)
chr7 (152-221)||(19377554-19377623)
chr7 (143-187)||(19400247-19400291)
chr7 (134-186)||(27387163-27387215)
chr7 (147-222)||(38991076-38991151)
chr7 (143-187)||(45197906-45197950)
[»] chr5 (24 HSPs)
chr5 (130-222)||(33007027-33007119)
chr5 (143-222)||(2476506-2476585)
chr5 (143-222)||(13942648-13942727)
chr5 (143-222)||(14832706-14832785)
chr5 (143-222)||(15675454-15675533)
chr5 (143-222)||(34846487-34846566)
chr5 (143-221)||(1672382-1672460)
chr5 (144-222)||(35469044-35469122)
chr5 (136-222)||(37552055-37552141)
chr5 (136-222)||(37654885-37654971)
chr5 (134-222)||(16567932-16568020)
chr5 (143-222)||(7161979-7162058)
chr5 (130-221)||(12267265-12267356)
chr5 (136-222)||(21069162-21069248)
chr5 (143-222)||(15504090-15504169)
chr5 (152-222)||(36234459-36234529)
chr5 (141-221)||(30249107-30249187)
chr5 (151-222)||(32953571-32953642)
chr5 (151-222)||(37779784-37779855)
chr5 (143-222)||(43228538-43228617)
chr5 (143-222)||(34444107-34444187)
chr5 (143-222)||(6900908-6900987)
chr5 (151-222)||(37607577-37607648)
chr5 (171-221)||(767440-767490)
[»] scaffold0638 (1 HSPs)
scaffold0638 (143-222)||(4219-4298)
[»] scaffold0618 (1 HSPs)
scaffold0618 (143-222)||(1837-1916)
[»] scaffold0075 (2 HSPs)
scaffold0075 (143-222)||(11665-11744)
scaffold0075 (143-222)||(7052-7130)
[»] scaffold0021 (2 HSPs)
scaffold0021 (141-222)||(109196-109278)
scaffold0021 (136-222)||(112092-112179)
[»] scaffold0015 (1 HSPs)
scaffold0015 (143-187)||(214025-214069)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 4957390 - 4957509
Alignment:
Q  18 acatatgtgtttgtttaagaaattttcgtggtacttttgatttcggtatgcatttatatcctttctccattgataagctcgtcacatacaataatgtagg 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||     
T  4957390 acatatgtgtttatttaagaaattttcgtggtacttttgatttcgatatgcatttatatccttcctccattgatgagctcgtcacatacaataatgtaga 4957489  T
Q  118 ctttgatagatgtacaaaca 137  Q
    ||||||||||||||||||||    
T  4957490 ctttgatagatgtacaaaca 4957509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 31364335 - 31364256
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31364335 ggagccagaaattttatagagcatgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 31364256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 10058737 - 10058658
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10058737 ggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 10058658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 40969445 - 40969367
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  40969445 ggagccagcaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcatattt 40969367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 2017332 - 2017411
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2017332 ggagccaggaattttataaagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 2017411  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 2521793 - 2521872
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2521793 ggagccaggaattttatagaacatgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttc 2521872  T

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Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 10715877 - 10715798
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10715877 ggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttc 10715798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 10929647 - 10929568
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10929647 ggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttc 10929568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 46645824 - 46645745
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46645824 ggagccaggaattttatagagtctgggaaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 46645745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 52373975 - 52373896
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373975 ggagccaggaattttatagagtctgtgcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 52373896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 4728779 - 4728701
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4728779 ggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcaaataatttcacattt 4728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 11826930 - 11827022
Alignment:
Q  130 tacaaacagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||| | | |||||||||||||||||||| | ||||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  11826930 tacaaacagtggcgaagccagaaattttatagagcctaggcaaaaaaattatcgtaaaatgttacttccttcctgcgaataatttcacatttc 11827022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 4552406 - 4552327
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  4552406 ggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacaaataatttcacatttc 4552327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 32006095 - 32006025
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32006095 aattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 32006025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 41972330 - 41972415
Alignment:
Q  136 cagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||| |||||||| ||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41972330 cagtagcggagccaggaattttataaaatctggtcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 41972415  T

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Target: chr4; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 9003776 - 9003697
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  9003776 ggagtcagaaattttatagagcctggacaaaaaaattatcgcaaaatgttacttccttcttgcgaataatttcacatttc 9003697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 14044545 - 14044466
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||    
T  14044545 ggagccagaaattttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttc 14044466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 43003079 - 43003158
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||  ||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  43003079 ggagccagaaattttatagagtctggacaaaaaatttattgcagaacgttacttctttcctgcgaataatttcacatttc 43003158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 50100075 - 50100012
Alignment:
Q  159 tagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50100075 tagagtttgggtaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 50100012  T

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Target: chr4; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 25237809 - 25237730
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| || |||| |||||||| ||||||||   |||||| |||||||||||||||||||||||||||||||||||||||    
T  25237809 ggagctaggaattatatagagcatgggcaaattttttatcacaaaacgttacttccttcctgcgaataatttcacatttc 25237730  T

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Target: chr4; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 32828364 - 32828285
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||||| || ||||||||||| ||||| |||||  ||||||||||||||| |||||||| |||||||    
T  32828364 ggagccagaaattttatagggcctgggcaaaaaaattatcacaaaatattacttccttcctgcaaataattttacatttc 32828285  T

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Target: chr4; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 9694285 - 9694208
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||| |||| ||||||| |||||||||||| |||||||    
T  9694285 ggagccagaaatttt-tagagcctgggcaaaaaatt-atcgcaaaatgttatttccttcttgcgaataatttgacatttc 9694208  T

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Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 2576393 - 2576315
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||  ||||||||| ||  ||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||    
T  2576393 ggagccaagaattttataaagtctgggcaaaaaaattatcgcaaaacgttacttcctttctgcgattaatttcatattt 2576315  T

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Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 50384094 - 50384024
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataattt 214  Q
    |||||||  ||||||||||||| |||||||||||   || ||||||||||||||||||||||||||||||||    
T  50384094 ggagccaagaattttatagagcctgggcaaaaaaaa-attgcaaaacgttacttccttcctgcgaataattt 50384024  T

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Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 49745263 - 49745199
Alignment:
Q  157 tatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||  |||| ||||||||||||| |||| ||||| ||||||||||||||||||| ||||||    
T  49745263 tatagagtctggggaaaaaatttatcgtaaaatgttacgtccttcctgcgaataattttacattt 49745199  T

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Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 1585864 - 1585811
Alignment:
Q  169 gcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||||| ||| |||| | ||||||||||||||||||    
T  1585864 gcaaaaaaattatcgcaaaacgttgctttcttcgtacgaataatttcacatttc 1585811  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 36947704 - 36947650
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcg 206  Q
    ||||||||| ||||||| ||||||| ||||||||||||  || ||||||||||||    
T  36947704 aattttataaagcttggacaaaaaaattatcgcaaaacaatatttccttcctgcg 36947650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 6017338 - 6017306
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaa 175  Q
    |||||||||||||||||||||| ||||||||||    
T  6017338 ggagccagaaattttatagagcctgggcaaaaa 6017306  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 6255477 - 6255437
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcg 183  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  6255477 ggagccagaaattatatagagtttgggcgaaaaatttatcg 6255437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 12211092 - 12211136
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||||||  ||||||| |||| |||||||||||||||||||||||    
T  12211092 ggagccatgaattttacagagtttgggcaaaaaatttatcgcaaa 12211136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 25182733 - 25182785
Alignment:
Q  135 acagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||||||  ||||||| ||||||||||||| | ||||||||| ||||||||||    
T  25182733 acagtagcagagccaggaattttatagagcctaggcaaaaaaattatcgcaaa 25182785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 37236124 - 37236168
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||||    
T  37236124 ggagccagaaattacatagagcctgggcgaaaaatttatcgcaaa 37236168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 9696277 - 9696197
Alignment:
Q  142 tggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9696277 tggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 9696197  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 2941450 - 2941364
Alignment:
Q  136 cagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2941450 cagtggtggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 2941364  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 339559 - 339480
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||    
T  339559 ggagctagaaattttatagagcttgggcaaaaaatttatcgcaaaatgttacttccttcctgcaattaatttcacatttc 339480  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 10397708 - 10397783
Alignment:
Q  147 ccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10397708 ccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 10397783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 1780939 - 1781017
Alignment:
Q  144 gagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780939 gagccaggaattttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 1781017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 34248917 - 34248987
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34248917 aattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcggataatttcacatttc 34248987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 28614292 - 28614377
Alignment:
Q  136 cagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||| |||||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  28614292 cagtggtggaggcagaaattttatagagcctgtgcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 28614377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 9046810 - 9046889
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||    
T  9046810 ggagccagaaattttatagagtttgggcaaaaaatttatcggaaaacgttatttccttcctttgaataatttcacatttc 9046889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 14938817 - 14938896
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  14938817 ggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttactttcttcctgggaataatttcacatttc 14938896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 15122264 - 15122186
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  15122264 ggagtcaggaattttatagagtttgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattt 15122186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 31188207 - 31188285
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||  ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  31188207 ggagccatgaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgtgaataatttcacattt 31188285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 23663656 - 23663733
Alignment:
Q  145 agccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||| ||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23663656 agccaggaattttatagagcctggataaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacatttc 23663733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 31200051 - 31200130
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgc-aaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||  ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  31200051 ggagccatgaattttatagagcatgggcaaaaaaattatcgctaaaacgttacttccttcctgcgaataatttcacattt 31200130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 2960893 - 2960814
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||| || || ||||| |||| |||||| |||||||||||| ||||||||||||||||||||    
T  2960893 ggagccagaaattttatagagcctgagcgaaaaaattattgcaaaatgttacttccttcttgcgaataatttcacatttc 2960814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 15529167 - 15529088
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||| ||||||||||||| | |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  15529167 ggagtcaggaattttatagagcctaggcaaaaaatttatcgcaaaacattacttctttcctacgaataatttcacatttc 15529088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 2836066 - 2836141
Alignment:
Q  147 ccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||||||||||||  || |||||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  2836066 ccaggaattttatagagtctgagcaaaaaatttattacaagacgttacttccttcctgcgaataatttcacatttc 2836141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 34189019 - 34188940
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| |||||| |||||| || ||||||||||| |||||||||||||| ||  || ||||||||||||||||||||    
T  34189019 ggagccaggaattttctagagcctgagcaaaaaatttgtcgcaaaacgttacctctctcttgcgaataatttcacatttc 34188940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 3051174 - 3051130
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||| ||||||| ||||||| |||||| ||||||||||||||||    
T  3051174 ggagcgagaaattatatagagtttgggcgaaaaatttatcgcaaa 3051130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 36406384 - 36406463
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36406384 ggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 36406463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 35384260 - 35384339
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  35384260 ggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacggtacttccttcctacgaataatttcacatttc 35384339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 38214946 - 38214867
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  38214946 ggagccagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttcattcctgcgaataatttcacatttc 38214867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 27321758 - 27321835
Alignment:
Q  144 gagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  27321758 gagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 27321835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 34282759 - 34282834
Alignment:
Q  147 ccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34282759 ccagaaattttatagagcctggacaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcacatttc 34282834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 24965231 - 24965153
Alignment:
Q  144 gagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  24965231 gagccaggaattttatagagcctgggcaaaaaatttatcgcaaaaccttactttctttctgcgaataatttcacatttc 24965153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 3383914 - 3383993
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||| | || ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  3383914 ggagccagaaattttatagaacatgagcaaaaattttatcgcaaaacgttacttccttcctacgaataatttcacgtttc 3383993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 28928289 - 28928202
Alignment:
Q  134 aacagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||| | |||||||| ||||||| ||||  |||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  28928289 aacagtggcggagccaggaattttaaagagtctgggtaaaaaatttatcgtaaaaagttacttccttcctgcgaataatttcacattt 28928202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 13243342 - 13243273
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||  ||| ||| |||||||||||||||    
T  13243342 aattttatagagcctgagcaaaaaatttatcgtaaaacgttacttttttcttgccaataatttcacattt 13243273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 21958823 - 21958779
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||| || |||||||||||||||||||||||| |||||||||||    
T  21958823 ggagctaggaattttatagagcttgggcaaaaagtttatcgcaaa 21958779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 10014318 - 10014360
Alignment:
Q  145 agccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||    
T  10014318 agccagaaattatatagagcctgggcgaaaaatttatcgcaaa 10014360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 30791358 - 30791399
Alignment:
Q  145 agccagaaattttatagagcttgggcaaaaaatttatcgcaa 186  Q
    |||||| ||||| |||||| ||||||||||||||||||||||    
T  30791358 agccaggaatttcatagagtttgggcaaaaaatttatcgcaa 30791399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 5637574 - 5637618
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||||||| ||||  ||||||||||||| ||||||||||||||||    
T  5637574 ggagccaggaattacatagagcttgggcgaaaaatttatcgcaaa 5637618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 37516847 - 37516768
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37516847 ggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 37516768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 26370937 - 26371016
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26370937 ggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 26371016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 25391741 - 25391819
Alignment:
Q  144 gagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  25391741 gagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacattacttccttcttacgaataatttcacatttc 25391819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 14461291 - 14461212
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  14461291 ggagccaggaattttatagagcctgggcaaaaaatttatcacaaaacgttacttccttcctacgaataattttacatttc 14461212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 28311503 - 28311424
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  28311503 ggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctacgaataatttcacatttc 28311424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 41218250 - 41218329
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||| ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41218250 ggagtcaggaattttatagagtctaggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 41218329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 43700088 - 43700167
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  43700088 ggagtcagaaattttatagagcttgggtaaaaaatatatcgcaaaacgttacttcttttctgcgaataatttcacatttc 43700167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 33178987 - 33179065
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||| ||| ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33178987 ggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattt 33179065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 12910052 - 12909975
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  12910052 ggagccaggaattttatagagcctgggcaaaaaatttatcgcaaatcgttacttccttcc--cgaataatttcacatttc 12909975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 7501182 - 7501103
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| | |  |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7501182 ggagccaggaattttatagagcctcgataaaaaatttatcgcaaaacgttacttacttcctgcgaataatttcacatttc 7501103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 53988058 - 53987978
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaa-tttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||   |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  53988058 ggagccagaaattttatagagtccgggcaaaaaaatttattgcaaaatgttacttccttcctgcgaataatttcacatttc 53987978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 26278556 - 26278477
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| ||||||||||||||| || ||||||||| ||||||||||| | |||||||||| ||||||||||||||||||||    
T  26278556 ggagcaagaaattttatagagtttaggcaaaaaaattatcgcaaaatgatacttccttcttgcgaataatttcacatttc 26278477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 53652124 - 53652045
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  ||| |||||||||||||||||||| |||| | |||||| ||||||||||||||||||    
T  53652124 ggagccaggaattttatagagtctggacaaaaaatttatcgcaaaacattacgttcttcctacgaataatttcacatttc 53652045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 44047809 - 44047731
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| |||||| |||||  ||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  44047809 ggagccaggaatttt-tagagtctggacaaaaaatttatcgcaaaacgttacttctttcctacaaataatttcacatttc 44047731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 41358516 - 41358593
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| ||||||||| ||||| |||| ||||||| |||||||||||||||| |||||||||||| |||||| ||||||||    
T  41358516 ggagcaagaaatttt-tagag-ttggacaaaaaaattatcgcaaaacgttatttccttcctgcggataattgcacatttc 41358593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 31989336 - 31989295
Alignment:
Q  145 agccagaaattttatagagcttgggcaaaaaatttatcgcaa 186  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  31989336 agccagaaatttcatagagcctgggcaaaaaatttatcgcaa 31989295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 35077687 - 35077641
Alignment:
Q  149 agaaattttatagagcttgggcaaaaaatttatcgcaaaacgttact 195  Q
    |||||||||||||||| ||||||||||| | ||||||||| ||||||    
T  35077687 agaaattttatagagcctgggcaaaaaaataatcgcaaaatgttact 35077641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 6891568 - 6891511
Alignment:
Q  130 tacaaacagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||||||||| | |||||||| ||||  ||||||| ||||| ||||||||||||||||    
T  6891568 tacaaacagtggcggagccaggaattacatagagcctgggcgaaaaatttatcgcaaa 6891511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 51408473 - 51408517
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||||||||||||||||||   |||||||||| |||||||||||    
T  51408473 ggagccagaaattttatagaatctgggcaaaaagtttatcgcaaa 51408517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 41114764 - 41114843
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41114764 ggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcatgcgaataatttcacatttc 41114843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 17149017 - 17148938
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17149017 ggagctagaaattttattgagcttgggcaaaaaatttatctcaaaacgttacttccttcctgcgaataatttcacatttc 17148938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 29257587 - 29257508
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29257587 ggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttc 29257508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 2476018 - 2475948
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2476018 aattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttc 2475948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 303986 - 304065
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||    
T  303986 ggagccagaaattttatagagtttgggcaaaaaaattatcgcaaaacgttacttcttatctgcgaataatttcacatttc 304065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 22572616 - 22572695
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22572616 ggagccaggaattttataaagcctggacaaaaaatttatcgcaaaacgttactttcttcctgcgaataatttcacatttc 22572695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 41010733 - 41010654
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| || ||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41010733 ggagctaggaattttatagagtgtggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 41010654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 13203988 - 13203910
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  13203988 ggagccaggaattttatagagcatgagcaaaaaatttatcgcaaaatgttacttccttccagcgaataatttcacattt 13203910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 18299049 - 18299116
Alignment:
Q  155 tttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18299049 tttataaagtttgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttc 18299116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 17249551 - 17249472
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||| ||||||||||||  ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||    
T  17249551 ggagtcaggaattttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttc 17249472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 16220923 - 16221001
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||  |||||| |||||||    
T  16220923 ggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttatttcctttctgcatataattgcacattt 16221001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 6799780 - 6799859
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| || ||||||||||||| ||||||||   |||||| |||||||||| ||||||||||||||||||||||||||||    
T  6799780 ggagctaggaattttatagagcctgggcaaattttttatcacaaaacgttagttccttcctgcgaataatttcacatttc 6799859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 12000778 - 12000700
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||| |||| |||||||| | ||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||    
T  12000778 ggagccaggaattatatagagcctaggcaaaaaaattatcgcaaaatgttacgtccttcctgcgaataattttacattt 12000700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 33909246 - 33909320
Alignment:
Q  148 cagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||  |||||||||| |||||||||||| ||||| |||||| ||| ||||||||||||||||    
T  33909246 cagaaattttatagagtctgggcaaaaactttatcgcaaaatgttacatccttcatgcaaataatttcacatttc 33909320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 25563193 - 25563114
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| |||||||||||||||||| ||    |||||||||||||||||||||||| |||| |||||||||| |||||    
T  25563193 ggagccaggaattttatagagcttgggaaatttttttatcgcaaaacgttacttcctttctgcaaataatttcatatttc 25563114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 45444376 - 45444427
Alignment:
Q  171 aaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  45444376 aaaaaatttattgcaaaacattacttccttcctgcgaataatttcacatttc 45444427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 15651433 - 15651384
Alignment:
Q  172 aaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  15651433 aaaaatttatcgcaaaatgttacgtccttcctgcgaataattttacattt 15651384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 26655693 - 26655733
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcg 183  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  26655693 ggagccaaaaattttatagagcctgggcaaaaaatttatcg 26655733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 35649541 - 35649585
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||    
T  35649541 ggagccagaaattttatagagtttgggcaaaaatttaatcgcaaa 35649585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 1955140 - 1955096
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||||||||||||| |||||  ||| ||||||||||||||||||    
T  1955140 ggagccagaaattttttagagtatggacaaaaaatttatcgcaaa 1955096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 18425820 - 18425864
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  18425820 ggagtcaggaattttatagaacttgggcaaaaaaattatcgcaaa 18425864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 42755577 - 42755621
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||||||| |||| |||||||| ||||| ||||||||||||||||    
T  42755577 ggagccaggaattatatagagcctgggcgaaaaatttatcgcaaa 42755621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 14727550 - 14727471
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14727550 ggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttc 14727471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 33468866 - 33468945
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33468866 ggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 33468945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 25007684 - 25007605
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25007684 ggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 25007605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 37153885 - 37153964
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37153885 ggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 37153964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 1428307 - 1428392
Alignment:
Q  136 cagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  1428307 cagtagcggagccaggaattttatagagcctgggcaaaaaatttaccgcaaaacgttacttccttcctacgaataatttcacattt 1428392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 31844536 - 31844615
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31844536 ggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttc 31844615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 44305632 - 44305553
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  44305632 ggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttc 44305553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 9527276 - 9527198
Alignment:
Q  144 gagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  9527276 gagccagaaattttatagagtatgggcaaaaaatttatcgcaaaacgttactgtcttcctgcgaataatttcacatttc 9527198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 4774192 - 4774113
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  4774192 ggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttc 4774113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 49898608 - 49898529
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  49898608 ggagccagaaattatatagagtctgggcaaaaaatttatcgcaaaatgttacgtccttcctgcgaataatttcacatttc 49898529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 6331881 - 6331806
Alignment:
Q  147 ccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  6331881 ccaggaattttatagagcatgagcaaaaaatttatcgcaaaacgttacttccttccttcaaataatttcacatttc 6331806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 8239492 - 8239413
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  8239492 ggagccaggaattttatagaacctaggcaaaaaatttatcgcaaaacgttacttccttcctatgaataatttcacatttc 8239413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 27460898 - 27460820
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||  ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27460898 ggagccaagaattttatagagcctggg-aaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttc 27460820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 34459341 - 34459262
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  34459341 ggagccaggaattttatagagtctgggcaaaaaatttatcacaaaacgttacttccttcccacgaataatttcacatttc 34459262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 24646268 - 24646189
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||| ||||| |||||||||||| |||||||||||||| |||||    
T  24646268 ggagccaggaattttatagagcctgggcaaaaaaattatctcaaaatgttacttccttcatgcgaataatttcaaatttc 24646189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 4641941 - 4642011
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||  | |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  4641941 aattttatagagcccgtgcaaaaaatcaatcgcaaaacgttacttccttcctgcgaataatttcacatttc 4642011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 27583912 - 27583987
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| || |||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  27583912 ggagccaggaattttatagagcctgagcaaaaaatttatcgcaaaacgtta----cttcctgcgaataatttcacatttc 27583987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 25011435 - 25011503
Alignment:
Q  146 gccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataattt 214  Q
    |||||||||||||||||   ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  25011435 gccagaaattttatagaatctgggcaaaaaaattatcgcaaaacgttacttccttcatgcgaataattt 25011503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 6801980 - 6802058
Alignment:
Q  144 gagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||| | |||| |||||| ||||||||    
T  6801980 gagcaagaaattttatagagtttggacaaaaaatttatcgcaaaacgttatttcctacatgcggataattgcacatttc 6802058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 24745625 - 24745548
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  ||||||||||| |||||||  || ||||||| |||| ||||||||||||||||||||    
T  24745625 ggagccaggaattttatagagtctgggcaaaaaaattatcgc--aatgttactttcttcatgcgaataatttcacatttc 24745548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 17875623 - 17875579
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||    
T  17875623 ggagccataaattttatagagtctgggcaaaaaatttatcgcaaa 17875579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 3830146 - 3830102
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||||||| || ||||| ||||| |||||||||||||||||||||    
T  3830146 ggagccaggaaatttatggagctcgggcaaaaaatttatcgcaaa 3830102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 11957311 - 11957355
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||||||||| |||||  || |||||||||||||||||||||||    
T  11957311 ggagccagaaaatttatgaagtttgggcaaaaaatttatcgcaaa 11957355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 26722863 - 26722933
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722863 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 26722933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 4843531 - 4843461
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4843531 aattttatagagcttgagcaaaaaatttatcgcaaaacgttacttctttcctgcgaataatttcacatttc 4843461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 3012542 - 3012463
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||    
T  3012542 ggagccagaaattttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttc 3012463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 22206581 - 22206660
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| |||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  22206581 ggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttc 22206660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 22228158 - 22228079
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| |||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  22228158 ggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttc 22228079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 28693898 - 28693977
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  28693898 ggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaactttacttcctttctgcgaataatttcacatttc 28693977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 35300323 - 35300402
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  35300323 ggagccaggaattttatagagcttgggaaaaaaatttatcgtaaaacgttacttccttcttacgaataatttcacatttc 35300402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 5991322 - 5991394
Alignment:
Q  150 gaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  5991322 gaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataattttacatttc 5991394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 41759531 - 41759596
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcac 217  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41759531 aattttatagagtctgggcaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcac 41759596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 7873115 - 7873194
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||| ||||||||||||||  ||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||    
T  7873115 ggagcctgaaattttatagagtctgggcaaaaaaattatcgcaaaatgttacttccttcccgctaataatttcacatttc 7873194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 21932637 - 21932716
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||| ||||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||    
T  21932637 ggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttc 21932716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 25688106 - 25688185
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||| |||| |||||| |||||| |||| ||||||||||| ||| |||||||||||||||||    
T  25688106 ggagccagaaattttatagagcctgggtaaaaaaattatcgtaaaatgttacttcctttctgtgaataatttcacatttc 25688185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 814868 - 814946
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||| |||| |||||||  ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  814868 ggagccaggaattatatagagtctgggcaaaaaaattatcgcaaaacgttacttcattcctgctaataatttcacattt 814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 42439462 - 42439535
Alignment:
Q  148 cagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  42439462 cagaaattttatagggtctgggcaaaaaatttatcgcaaaacgttacttcttttctacgaataatttcacattt 42439535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23704352 - 23704443
Alignment:
Q  131 acaaacagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||  ||||| ||| |||||||||||| ||||  ||||||||||||| ||||||||||||| ||| |||||||||||| |||||||    
T  23704352 acaaacagtgttggagtcaggaattttatagagtttggataaaaaatttatcgtaaaacgttacttctttcttgcgaataattttacatttc 23704443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 30852530 - 30852451
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||| ||||   |||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||    
T  30852530 ggagccagaaattttttagaatctggggaaaaaaattatcgcaaaatgttgcttccttcctgcgaataatttcacatttc 30852451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 38128875 - 38128955
Alignment:
Q  142 tggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||||| |   | |||||||| ||||||||||||||||| |||||||||||  |||||||||||||||    
T  38128875 tggagccagaaattttataaaatctaggcaaaaattttatcgcaaaacgttatttccttcctgcagataatttcacatttc 38128955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 19377623 - 19377554
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||| |||||||  ||||||||||| ||||||||||| ||||  || |||||||||||||||||||||||    
T  19377623 aattatatagagtctgggcaaaaaaattatcgcaaaatgttatgtctttcctgcgaataatttcacattt 19377554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 19400291 - 19400247
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    |||||||||||||||||||||| |||||||||| |||||||||||    
T  19400291 ggagccagaaattttatagagcctgggcaaaaagtttatcgcaaa 19400247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 27387163 - 27387215
Alignment:
Q  134 aacagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaa 186  Q
    |||||| | |||||||||||||| ||||||| |||||||||||||||||||||    
T  27387163 aacagtggcggagccagaaatttcatagagcctgggcaaaaaatttatcgcaa 27387215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 38991076 - 38991151
Alignment:
Q  147 ccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||||||||||||   || ||||||| ||||||||||||||||  | ||||||||||||||||||| |||||    
T  38991076 ccaggaattttatagagtccggacaaaaaagttatcgcaaaacgttatcttcttcctgcgaataatttcatatttc 38991151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 45197950 - 45197906
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||    
T  45197950 ggagccagaaattctatagagtgtgggcaaaaaatttatcgcaaa 45197906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 33007119 - 33007027
Alignment:
Q  130 tacaaacagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| |||| | |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33007119 tacaatcagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 33007027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 2476585 - 2476506
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2476585 ggagccagaaattatatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 2476506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 13942648 - 13942727
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13942648 ggagccagaaattttatagagcctgggtaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttc 13942727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 14832706 - 14832785
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14832706 ggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttc 14832785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 15675533 - 15675454
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15675533 ggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 15675454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 34846566 - 34846487
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34846566 ggagccaggaattttatagagcctggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 34846487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 1672382 - 1672460
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  1672382 ggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 1672460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 35469122 - 35469044
Alignment:
Q  144 gagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35469122 gagccaggaattttatagagcctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttc 35469044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 37552141 - 37552055
Alignment:
Q  136 cagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  37552141 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttc 37552055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 37654971 - 37654885
Alignment:
Q  136 cagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  37654971 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttc 37654885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 16568020 - 16567932
Alignment:
Q  134 aacagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||| | |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  16568020 aacagtggcggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttc 16567932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 7161979 - 7162058
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||    
T  7161979 ggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcaaataatttcacatttc 7162058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 12267265 - 12267356
Alignment:
Q  130 tacaaacagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||| ||||| | ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  12267265 tacatacagtggcggagccagacattttatagagcctgggcaaaaagtttatcgcaaaacgttacttccttcctgtgaataatttcacattt 12267356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 21069248 - 21069162
Alignment:
Q  136 cagtagtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  21069248 cagtggtggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttatttccttcctggaaataatttcacatttc 21069162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 15504169 - 15504090
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||| |||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15504169 ggagccagaaattatatagagcctcgacaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttc 15504090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 36234459 - 36234529
Alignment:
Q  152 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  36234459 aattttatagagtttggacaaaaaatttatcgcaaaatgttacttccttcttgcgaataatttcacatttc 36234529  T

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Target: chr5; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 30249187 - 30249107
Alignment:
Q  141 gtggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    |||||||||| ||||||| ||||  ||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  30249187 gtggagccaggaattttacagagtctgggcaaaaaatttatcgcaaaacgttgctttcttcctgcaaataatttcacattt 30249107  T

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Target: chr5; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 32953571 - 32953642
Alignment:
Q  151 aaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||    
T  32953571 aaattttatagagcctgtgcaaaaaagttatcgcaaaatgttacttccttcctacgaataatttcacatttc 32953642  T

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Target: chr5; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 37779855 - 37779784
Alignment:
Q  151 aaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||| |||||||| |||||| |||| ||||||||||||| |||||||||||||||||||    
T  37779855 aaattttatagagcttgtgcaaaaaaattatcgtaaaatgttacttccttccagcgaataatttcacatttc 37779784  T

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Target: chr5; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 43228538 - 43228617
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||| |||||| | |||||||||||||||||| |||||    
T  43228538 ggagccagaaattttatagagcctgggcaaaaaactaatcgcaaaatgttactcctttcctgcgaataatttcatatttc 43228617  T

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Target: chr5; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 34444187 - 34444107
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaat-ttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| || ||||||| ||||| |||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  34444187 ggagctaggaattttagagagcctgggcaaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttc 34444107  T

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Target: chr5; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 6900987 - 6900908
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| ||||||||| ||||||  || | |||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  6900987 ggagacagaaatttaatagagtatgagtaaaaaatttatcgcaaaatgttacttccttcatgcgaataatttcacatttc 6900908  T

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Target: chr5; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 37607648 - 37607577
Alignment:
Q  151 aaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||||||||||||| |||||||| |||||| |||| ||||||||||||| || ||||||||||||||||    
T  37607648 aaattttatagagcttgtgcaaaaaaattatcgtaaaatgttacttccttccagcaaataatttcacatttc 37607577  T

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Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 767490 - 767440
Alignment:
Q  171 aaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 221  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  767490 aaaaaatttattgcaaaacgttactttcttcctgcgaataatttctcattt 767440  T

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Target: scaffold0638 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 4298 - 4219
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  4298 ggagccataaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttc 4219  T

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Target: scaffold0618 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 1916 - 1837
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1916 ggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttc 1837  T

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Target: scaffold0075 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 11744 - 11665
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11744 ggagccaggaattttatagaacctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 11665  T

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Target: scaffold0075; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 7130 - 7052
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||| || ||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  7130 ggagctaggaattttatagaacctgggcaaaaaatttatcgcaaa-cgttacttccttcctacgaataattttacatttc 7052  T

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Target: scaffold0021 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 109196 - 109278
Alignment:
Q  141 gtggagccagaaattttatagagcttgggcaaaaa-atttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    ||||||| |||||||| ||||||| ||| |||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  109196 gtggagctagaaatttcatagagcctggacaaaaatatttattgcaaaacattacttccttcctgcgaataatttcacgtttc 109278  T

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Target: scaffold0021; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 112092 - 112179
Alignment:
Q  136 cagtagtggagccagaaattttatagagcttgggcaaaaa-atttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 222  Q
    |||| |||||| ||||||||| || |||| |||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| ||||    
T  112092 cagtggtggagtcagaaatttcattgagcctgggcaaaaatatttattgcaaaacattacttccttcctgcaaataatttcacgtttc 112179  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 214025 - 214069
Alignment:
Q  143 ggagccagaaattttatagagcttgggcaaaaaatttatcgcaaa 187  Q
    ||||| || |||||||||||||||||||||||| |||||||||||    
T  214025 ggagctaggaattttatagagcttgggcaaaaagtttatcgcaaa 214069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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