View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9857_high_4 (Length: 483)
Name: NF9857_high_4
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_high_4 |
 | |
|
| [»] scaffold0072 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0072 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 1071 - 1301
Alignment:
| Q |
18 |
ggtttgttgcagacctgctttgccactaaaggatagttttgtcgaactcaaaggtggtgggttactatagtgtgatttcagattttggatatggtgctgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
1071 |
ggtttgttgcagacctgctttgccactaaaggatagttttgtcgaactcaaaggtggtgggtttctatggtgtgatctcaaattttggatatggtgctgg |
1170 |
T |
|
| Q |
118 |
ggtgaacttccttaatacctctactgtgaatttcaagtctttgttaattttgagagtgcttaggnnnnnnnnnnggtgggtgctaaggtttgtttgcctg |
217 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1171 |
ggtgaatttccttaatatttctagtgtgaatttcaagtctttgttaattttgagagtgcttaggttttttttttggtgggtgctaaggtttgtttgcctg |
1270 |
T |
|
| Q |
218 |
atagtaccaattgatatttgatttgtaggag |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1271 |
atagtaccaattgatatttgatttgtaggag |
1301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 311 - 475
Target Start/End: Original strand, 1365 - 1529
Alignment:
| Q |
311 |
gcttctattgtaacattttacttagcacaacttggttttggactaagtggttccatcaatggatttggtttcatgtaaatcttaattttcttttattctt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1365 |
gcttctattgtaacattttacttagcacaacttggttttggactaagtggttccatcaatggatttggtttcatgtaaatcttaattttcttttattctt |
1464 |
T |
|
| Q |
411 |
caatagttatgacagtaagttctattgtgtcttcatacggttatgatgattatctttcctttgct |
475 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1465 |
caatagttatgacagtaagttctgttgtgtcttcatacggtgatgatgattatctttcctttgct |
1529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 20646729 - 20646664
Alignment:
| Q |
361 |
ttccatcaatggatttggtttcatgtaaatcttaattttcttttattcttcaatagttatgacagt |
426 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
20646729 |
ttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgacagt |
20646664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 111137 - 111202
Alignment:
| Q |
361 |
ttccatcaatggatttggtttcatgtaaatcttaattttcttttattcttcaatagttatgacagt |
426 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
111137 |
ttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgacagt |
111202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 752980 - 752921
Alignment:
| Q |
18 |
ggtttgttgcagacctgctttgccactaaaggatagttttgtcgaactcaaaggtggtgg |
77 |
Q |
| |
|
||||||||||||||||| ||| ||| ||| ||||| ||||| |||| ||||||||||||| |
|
|
| T |
752980 |
ggtttgttgcagacctgttttcccaataagggataattttgccgaagtcaaaggtggtgg |
752921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 850529 - 850588
Alignment:
| Q |
18 |
ggtttgttgcagacctgctttgccactaaaggatagttttgtcgaactcaaaggtggtgg |
77 |
Q |
| |
|
||||||||||||||||| ||| ||| ||| ||||| ||||| |||| ||||||||||||| |
|
|
| T |
850529 |
ggtttgttgcagacctgttttcccaataagggataattttgccgaagtcaaaggtggtgg |
850588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University