View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_12 (Length: 471)
Name: NF9857_low_12
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 2 - 454
Target Start/End: Complemental strand, 12246805 - 12246351
Alignment:
| Q |
2 |
agagacatctacattacatttaagcctaccatgtcttggttgcctccacgtgatatccctattcatgttacccagattctgatcaaaatgttgatgaaca |
101 |
Q |
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| T |
12246805 |
agagacatctacattacatttaagcctaccatgtcttggttgcctccacgtgatatccctattcatgttacccagattctgatcaaaatgttgacgaaca |
12246706 |
T |
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| Q |
102 |
cctgtagttacggatgtgtgttcttgagccaagagacactacgtacggttagcactcatccatccctctaaaacatgcttagctctttcgagaattgtag |
201 |
Q |
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| T |
12246705 |
cctgtagttactgatgtgtgttcttgagccaagagacactacgtacggttagcactcatccatccctctaaaacatgcttagctctttcgagaattgtag |
12246606 |
T |
|
| Q |
202 |
tacctgacatatgttgccatactttacgattgtgagctttccatatactccacattatagttgtgctgc-taacatctgttgcaaaagattaaaaatgat |
300 |
Q |
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| T |
12246605 |
tacctgacacatgttgccatactttacgattgtgagctttccatatactccacattatggttgtgctgcttgacatctgttgcaaaagattaaaaatgat |
12246506 |
T |
|
| Q |
301 |
gtctggcacattatcaaaatgaccatagatactgcaatcaagtgccaaacattagcagcactccacacatcaagagttg-ttttactataaaagacgatg |
399 |
Q |
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| T |
12246505 |
ggctggcacgttatcaaaatgaccagagatactgcaatcaagtgccaaacattagcagcactccacacatcaatagttgtttttacaataaaagaaaatg |
12246406 |
T |
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| Q |
400 |
tggtagctatcctcacgtggatcattacatggacaatttatgtctctgctttttt |
454 |
Q |
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| T |
12246405 |
tggtagctatcctcatgtggatcattatatggacaatttatgtctctactttttt |
12246351 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 15924215 - 15924251
Alignment:
| Q |
281 |
tgcaaaagattaaaaatgatgtctggcacattatcaa |
317 |
Q |
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| T |
15924215 |
tgcaaaagattaaatatgatgtctggcgcattatcaa |
15924251 |
T |
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