View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_13 (Length: 465)
Name: NF9857_low_13
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 150 - 447
Target Start/End: Original strand, 4642159 - 4642464
Alignment:
| Q |
150 |
ttttttgtaaattgcaaccttgtttattatctacaaatcattaacacagacac-------------attaacatcaataataatttaaaaagtgacataa |
236 |
Q |
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| T |
4642159 |
ttttttgtaaattgcaaccttgtttattatctacaaattattaacacagacaccggacactgacacattaacatcaataataatttaaaaagtgacataa |
4642258 |
T |
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| Q |
237 |
ctgaatagcttcgtgtcggtatttgacattgacacttgtaacactagacttgacttctattataagtgttgatgctacaaagtttgttaatgttactgtt |
336 |
Q |
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| T |
4642259 |
ctgaatagcttcg-----gtatttgacattgacacttgtaacactagacttgacttctattataagtgttgatgctacaaagtttgttaatgttactgtt |
4642353 |
T |
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| Q |
337 |
tttgtgtgtgctgggtttgtgaagctgagtttttcaggcttccatatttgaaaccttatctgggtttcataaaaggtaggaacattgagcatggagtgaa |
436 |
Q |
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| T |
4642354 |
tttgtgtgtgctgggtttgtgaagctgagtttttcaggcttccatatttgaaaccttatctgggtttcataaatggtgggaacattgagcatggagtgaa |
4642453 |
T |
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| Q |
437 |
ttttgcggttg |
447 |
Q |
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| T |
4642454 |
ttttgcggttg |
4642464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 4641997 - 4642111
Alignment:
| Q |
31 |
agagccccaattgtctgatccctccttacggtaaaacccattttcatcatcccaatggacgctgctctgatggccgcctcatcgttgatttcatcggtat |
130 |
Q |
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| T |
4641997 |
agagccccgattgtctgctccctccttacggtaaaacccattttcatcatcccaatggacgctgctctgatggccgcctcatcgttgatttcatcggtat |
4642096 |
T |
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| Q |
131 |
aactcaatttccatc |
145 |
Q |
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| T |
4642097 |
aactcaatttccatc |
4642111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 4633049 - 4633108
Alignment:
| Q |
72 |
tttcatcatcccaatggacgctgctctgatggccgcctcatcgttgatttcatcggtata |
131 |
Q |
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| T |
4633049 |
tttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttcatcggtata |
4633108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 4654294 - 4654351
Alignment:
| Q |
72 |
tttcatcatcccaatggacgctgctctgatggccgcctcatcgttgatttcatcggta |
129 |
Q |
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| T |
4654294 |
tttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttcatcggta |
4654351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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