View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_15 (Length: 436)
Name: NF9857_low_15
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Original strand, 46110052 - 46110464
Alignment:
| Q |
6 |
ttgtgaatattagaacttgtgaaatactgcggtacttttgatttcaatgcttgaatcaaacaaaatacatacaatgctggtttatatagagcagatccta |
105 |
Q |
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| T |
46110052 |
ttgtgaatattagaacttgtgaaatactgcggtacttttgatttcaatgcttgaatcaaacaaaatacatacgatgctggtttatatagagcagatccta |
46110151 |
T |
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| Q |
106 |
atttaagaaaggcaacaattgagaatcactataataggacaaattgttagcataatttctatcttatttatttgtcatcttgatttcttggagctttcat |
205 |
Q |
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| T |
46110152 |
atttaagaaaggcaacaattgagaatcactataatagaacaaattgttagcataatttctatcttatttatttgtcatcttgatttcttggaactttcat |
46110251 |
T |
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| Q |
206 |
gtgcccttgtgtggtnnnnnnngagttttacctaattattatgtataaatttagtgttatggtgtgtttctacgtttaagatctttattattttaatata |
305 |
Q |
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| T |
46110252 |
gtgcccttgtgtggt--aaaaagagttttacctaattattatgtataaatttagtgttatggtgtgtttctacgtttaagatctttattattttaatata |
46110349 |
T |
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| Q |
306 |
cgttcatatgattatgtttctcctaataaataaagtggcctacttgaggtgattaacgtgtaataaaacaggaggcaatcctttcggatctttggggtgt |
405 |
Q |
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| T |
46110350 |
cattcatatgattatgtttctccaaataaataaagtggcctacttgaggtgattaacgtgtaataaaacaggaggcaatcctttcggatcttcggagtgt |
46110449 |
T |
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| Q |
406 |
tgttagtcatcatag |
420 |
Q |
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| T |
46110450 |
tgttagtcatcatag |
46110464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 46100670 - 46100796
Alignment:
| Q |
271 |
gtttctacgtttaagatctttattattttaatatacgttcatatgattatgtttctcctaataaata-aagtggcctacttgaggtgattaacgtgtaat |
369 |
Q |
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| T |
46100670 |
gtttcttcatttaagatcattattattttaatataagt-cgtatgattctgtttttcctactaaatataagtggtctaattaaggttattgtcgtttaat |
46100768 |
T |
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| Q |
370 |
aaaacaggaggcaatcctttcggatctt |
397 |
Q |
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| T |
46100769 |
gaaacaggaggcaatccttttggatctt |
46100796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 46109987 - 46110043
Alignment:
| Q |
9 |
tgaatattagaacttgtgaaatactgcggtacttttgatttcaatgcttgaatcaaa |
65 |
Q |
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| T |
46109987 |
tgaatattagaacttatgaaatattgaggcgcttttgatttcaatgcttgaatcaaa |
46110043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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