View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_16 (Length: 436)
Name: NF9857_low_16
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 29007533 - 29007114
Alignment:
| Q |
1 |
aggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcctagtccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29007533 |
aggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctgcaccacgccctcattctcctcctagtcca |
29007434 |
T |
|
| Q |
101 |
ccgaatggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007433 |
ccgaatggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatg |
29007334 |
T |
|
| Q |
201 |
agggtcgtttgggtgttccattgattacactcgtaatcatccgagctttcgcttggtcttannnnnnngttcacctttcagctatcaactagctagctca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29007333 |
agggtcgtttgggtgttccattgattacactcgtaatcatcttagctttcgcttggtcttctttttttgttcacctttcagctatcaactagctagctca |
29007234 |
T |
|
| Q |
301 |
cactagacagtttatttcactgatgtgggtgtttggtcatttataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007233 |
cactagacagtttatttcactgatgtgggtgtttggtcattcataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaa |
29007134 |
T |
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| Q |
401 |
ttgttccaaagtgagtgatg |
420 |
Q |
| |
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|||||||||||||||||||| |
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| T |
29007133 |
ttgttccaaagtgagtgatg |
29007114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 21465462 - 21465560
Alignment:
| Q |
1 |
aggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcctagtcc |
99 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
21465462 |
aggcctgaaactcaaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctatttctccaccatgccctcattctcctcctagtcc |
21465560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 21409686 - 21409773
Alignment:
| Q |
1 |
aggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcctagtcc |
99 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
21409686 |
aggcctgaaactcaaagtcaaagttcaagctcagtccaacaacac-----------ctccacctatttctccaccatgccctcattctcctcctagtcc |
21409773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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