View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_17 (Length: 406)
Name: NF9857_low_17
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 4467863 - 4468258
Alignment:
| Q |
11 |
cacagacatgcaaacataaagaatgagagtaatcagttcccctaatcagcattctaatcacatcatatttcaaagaatcaacccaatgatcattcctatt |
110 |
Q |
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| T |
4467863 |
cacacacatgcaaacataaagaatgagagtaatcagttcccctaatcagcattctaatcacatcatatttcaaagaatcaacccaatgatcattcctatt |
4467962 |
T |
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| Q |
111 |
aatatcttgatgatgcttgtaaatgcaacaaagtgtcccaacttcatttccatgaccaattatatcaccatcacttgctaatttcattgtaacatttttc |
210 |
Q |
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| T |
4467963 |
aatatcttgatgatgcttgtaaatgcaacaaagtgtcccaacttcatttccatgaccaattatatcaccatcacttgctaatttctttgtaacatttttc |
4468062 |
T |
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| Q |
211 |
aatatgatagccaaaattttctcagccaccttctccacacgtgattgaagagtttccatcttcttgctgcaatttcaacaaattttacattagaaaacat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4468063 |
aatatgatagccaaaattttctcagccaccttctccacacgtgattgaagagtttccatcttcttgctgcaatttcaacaaattttacattagaaaacat |
4468162 |
T |
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| Q |
311 |
tatataaataaaattgaagcaatactatcaaatgaagcaataacttaacagtatgtcaaatagtatctgtgtaattagtataatactattatgtac |
406 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4468163 |
tatataaataaaattgaagcaataatatcaaatgaagcaataacttaacagtatgtcaaatagtatctgtgtaattagtataatactattatgtac |
4468258 |
T |
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