View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_2 (Length: 743)

Name: NF9857_low_2
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_2
NF9857_low_2
[»] chr1 (33 HSPs)
chr1 (18-735)||(47254564-47255281)
chr1 (19-166)||(13548792-13548944)
chr1 (35-166)||(13546886-13547022)
chr1 (23-117)||(194750-194845)
chr1 (65-166)||(19752931-19753032)
chr1 (19-144)||(42297790-42297915)
chr1 (20-148)||(37876573-37876709)
chr1 (19-166)||(11348925-11349080)
chr1 (19-116)||(31925553-31925650)
chr1 (65-161)||(19754741-19754837)
chr1 (18-138)||(29136471-29136596)
chr1 (22-164)||(37032860-37033009)
chr1 (111-166)||(833970-834024)
chr1 (111-166)||(8550584-8550638)
chr1 (115-166)||(28220026-28220077)
chr1 (111-166)||(28223221-28223276)
chr1 (111-166)||(49918664-49918718)
chr1 (121-166)||(4552448-4552493)
chr1 (114-170)||(1833825-1833880)
chr1 (19-116)||(37168522-37168622)
chr1 (114-166)||(37503362-37503413)
chr1 (18-119)||(47115396-47115502)
chr1 (111-166)||(196710-196764)
chr1 (111-166)||(13137780-13137835)
chr1 (111-166)||(37559664-37559719)
chr1 (111-166)||(40122001-40122055)
chr1 (111-166)||(45644158-45644212)
chr1 (111-143)||(20762982-20763014)
chr1 (114-166)||(28265359-28265410)
chr1 (111-166)||(10925536-10925590)
chr1 (114-165)||(30476247-30476298)
chr1 (111-164)||(13659153-13659205)
chr1 (18-119)||(28242528-28242635)
[»] scaffold0466 (1 HSPs)
scaffold0466 (20-152)||(7552-7687)
[»] chr7 (34 HSPs)
chr7 (20-164)||(2360774-2360919)
chr7 (19-149)||(6359762-6359893)
chr7 (20-166)||(32357848-32357997)
chr7 (20-166)||(4510339-4510491)
chr7 (20-166)||(4512181-4512333)
chr7 (65-166)||(22270220-22270321)
chr7 (65-166)||(30814669-30814770)
chr7 (20-164)||(4508499-4508649)
chr7 (20-127)||(34310544-34310657)
chr7 (18-119)||(8359157-8359260)
chr7 (101-166)||(6430431-6430496)
chr7 (111-168)||(19502492-19502549)
chr7 (111-166)||(14069633-14069688)
chr7 (111-166)||(14379661-14379716)
chr7 (111-166)||(23555355-23555410)
chr7 (111-168)||(31732766-31732823)
chr7 (114-166)||(18126963-18127015)
chr7 (111-167)||(41317237-41317293)
chr7 (111-166)||(4586475-4586530)
chr7 (111-166)||(38671025-38671079)
chr7 (111-166)||(41648814-41648868)
chr7 (111-166)||(47675936-47675991)
chr7 (114-166)||(26417633-26417685)
chr7 (114-162)||(43864561-43864609)
chr7 (111-166)||(1113966-1114021)
chr7 (111-166)||(36146212-36146266)
chr7 (111-165)||(48489745-48489798)
chr7 (111-143)||(4179087-4179119)
chr7 (111-143)||(29991367-29991399)
chr7 (111-166)||(27348131-27348185)
chr7 (111-169)||(35854230-35854288)
chr7 (115-166)||(47673744-47673795)
chr7 (58-119)||(48599175-48599237)
chr7 (19-117)||(3259219-3259322)
[»] chr3 (35 HSPs)
chr3 (19-166)||(31340018-31340165)
chr3 (19-143)||(47304482-47304607)
chr3 (19-166)||(6095390-6095543)
chr3 (65-166)||(40913545-40913646)
chr3 (19-121)||(46173583-46173688)
chr3 (19-166)||(30236350-30236504)
chr3 (65-163)||(34491459-34491557)
chr3 (18-166)||(43403530-43403684)
chr3 (18-119)||(41819363-41819466)
chr3 (18-153)||(43401601-43401741)
chr3 (18-166)||(49199254-49199409)
chr3 (19-166)||(54593931-54594086)
chr3 (18-119)||(46860698-46860804)
chr3 (111-166)||(29196189-29196244)
chr3 (20-166)||(55301758-55301914)
chr3 (111-166)||(29813375-29813430)
chr3 (111-166)||(761158-761211)
chr3 (111-166)||(22834807-22834861)
chr3 (114-166)||(5236257-5236308)
chr3 (111-166)||(9666270-9666324)
chr3 (111-169)||(29682670-29682729)
chr3 (111-166)||(39153164-39153219)
chr3 (111-166)||(40734811-40734865)
chr3 (120-166)||(4160059-4160105)
chr3 (65-119)||(5433786-5433839)
chr3 (86-124)||(50432478-50432516)
chr3 (114-171)||(23391707-23391764)
chr3 (111-143)||(9635946-9635978)
chr3 (115-166)||(23410131-23410182)
chr3 (111-166)||(29811182-29811237)
chr3 (111-166)||(31314754-31314808)
chr3 (111-170)||(37408773-37408831)
chr3 (111-166)||(51399128-51399182)
chr3 (109-167)||(4570210-4570273)
chr3 (111-141)||(7762580-7762610)
[»] chr2 (22 HSPs)
chr2 (19-165)||(45727151-45727305)
chr2 (20-166)||(35446677-35446827)
chr2 (111-166)||(29868182-29868237)
chr2 (111-173)||(2334211-2334272)
chr2 (58-150)||(1631538-1631637)
chr2 (111-166)||(11690801-11690856)
chr2 (18-114)||(17450800-17450898)
chr2 (111-166)||(723547-723601)
chr2 (111-166)||(34139573-34139627)
chr2 (111-166)||(36987875-36987929)
chr2 (111-166)||(42362659-42362713)
chr2 (111-168)||(11151393-11151450)
chr2 (111-166)||(6594804-6594858)
chr2 (111-166)||(14633628-14633682)
chr2 (111-166)||(24885899-24885953)
chr2 (111-166)||(33162254-33162308)
chr2 (111-166)||(36773872-36773926)
chr2 (111-143)||(5723078-5723110)
chr2 (19-82)||(7451343-7451407)
chr2 (111-171)||(17057164-17057223)
chr2 (111-171)||(17085147-17085206)
chr2 (19-115)||(42287953-42288054)
[»] chr6 (20 HSPs)
chr6 (19-166)||(21589155-21589308)
chr6 (65-166)||(602903-603004)
chr6 (18-166)||(17758248-17758402)
chr6 (19-151)||(26829925-26830064)
chr6 (18-161)||(22424620-22424770)
chr6 (19-166)||(5043852-5044006)
chr6 (86-166)||(17763288-17763369)
chr6 (18-119)||(26800811-26800917)
chr6 (94-143)||(3808518-3808567)
chr6 (18-116)||(2972777-2972881)
chr6 (111-166)||(26954091-26954145)
chr6 (113-166)||(22963508-22963561)
chr6 (113-166)||(23824832-23824885)
chr6 (111-143)||(5408892-5408924)
chr6 (111-143)||(5413217-5413249)
chr6 (111-166)||(14521478-14521532)
chr6 (111-166)||(28137211-28137265)
chr6 (114-143)||(5406025-5406054)
chr6 (114-143)||(5410350-5410379)
chr6 (114-163)||(33211005-33211053)
[»] chr4 (36 HSPs)
chr4 (20-166)||(41639651-41639801)
chr4 (19-152)||(21688470-21688605)
chr4 (58-166)||(50262487-50262599)
chr4 (18-153)||(2209942-2210082)
chr4 (19-120)||(35662665-35662767)
chr4 (20-175)||(40632670-40632834)
chr4 (19-166)||(50673638-50673790)
chr4 (18-120)||(12073616-12073721)
chr4 (18-119)||(379604-379710)
chr4 (65-166)||(6656201-6656305)
chr4 (55-119)||(54881565-54881629)
chr4 (18-119)||(41964637-41964743)
chr4 (111-166)||(26175436-26175491)
chr4 (114-166)||(12739353-12739405)
chr4 (112-168)||(37740940-37740996)
chr4 (19-118)||(55085286-55085385)
chr4 (111-166)||(12743728-12743783)
chr4 (111-166)||(45686987-45687041)
chr4 (111-166)||(48893443-48893497)
chr4 (28-113)||(33990079-33990164)
chr4 (111-164)||(52467159-52467212)
chr4 (111-164)||(56178438-56178490)
chr4 (111-166)||(9927258-9927313)
chr4 (119-166)||(36994851-36994898)
chr4 (111-166)||(46147195-46147250)
chr4 (19-116)||(8665632-8665734)
chr4 (111-169)||(54199705-54199762)
chr4 (111-143)||(29999651-29999683)
chr4 (114-166)||(36463196-36463247)
chr4 (111-143)||(48143362-48143394)
chr4 (115-166)||(52082463-52082513)
chr4 (115-166)||(52095162-52095212)
chr4 (86-116)||(8648443-8648473)
chr4 (114-143)||(5369904-5369933)
chr4 (111-166)||(31474460-31474512)
chr4 (63-120)||(41961669-41961725)
[»] chr5 (24 HSPs)
chr5 (20-166)||(40751202-40751351)
chr5 (65-168)||(38747251-38747355)
chr5 (65-153)||(28278563-28278651)
chr5 (20-149)||(27015747-27015878)
chr5 (65-166)||(40147509-40147610)
chr5 (24-166)||(40763211-40763356)
chr5 (58-152)||(5058311-5058408)
chr5 (19-119)||(27637454-27637556)
chr5 (19-124)||(213693-213803)
chr5 (111-164)||(538334-538387)
chr5 (114-166)||(13488517-13488569)
chr5 (111-166)||(534072-534127)
chr5 (111-166)||(3075549-3075604)
chr5 (111-166)||(30682722-30682777)
chr5 (114-170)||(32637140-32637196)
chr5 (111-167)||(33831992-33832047)
chr5 (111-167)||(39468347-39468403)
chr5 (111-166)||(5887235-5887289)
chr5 (111-166)||(28750455-28750510)
chr5 (111-166)||(31183287-31183341)
chr5 (111-166)||(42426035-42426090)
chr5 (111-152)||(42428244-42428285)
chr5 (111-166)||(16649635-16649689)
chr5 (111-142)||(36073866-36073897)
[»] chr8 (22 HSPs)
chr8 (19-152)||(42434794-42434934)
chr8 (19-125)||(18655627-18655738)
chr8 (20-83)||(4283749-4283813)
chr8 (111-162)||(3303474-3303525)
chr8 (111-166)||(4743027-4743082)
chr8 (111-166)||(15213100-15213155)
chr8 (111-166)||(30143654-30143708)
chr8 (18-153)||(11384208-11384352)
chr8 (111-166)||(5689581-5689635)
chr8 (18-116)||(40328999-40329102)
chr8 (111-164)||(41366420-41366472)
chr8 (111-171)||(6599279-6599338)
chr8 (111-171)||(6674732-6674791)
chr8 (111-166)||(12702431-12702485)
chr8 (18-119)||(3772415-3772521)
chr8 (111-166)||(17982967-17983021)
chr8 (111-166)||(4731972-4732026)
chr8 (111-166)||(18105876-18105930)
chr8 (111-142)||(34254154-34254185)
chr8 (111-142)||(34256330-34256361)
chr8 (115-166)||(4283819-4283872)
chr8 (86-120)||(40222019-40222053)
[»] scaffold0176 (1 HSPs)
scaffold0176 (18-153)||(17807-17947)
[»] scaffold0066 (1 HSPs)
scaffold0066 (111-166)||(20216-20269)
[»] scaffold1668 (1 HSPs)
scaffold1668 (111-166)||(1301-1356)
[»] scaffold0006 (1 HSPs)
scaffold0006 (111-164)||(148914-148966)


Alignment Details
Target: chr1 (Bit Score: 615; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 18 - 735
Target Start/End: Complemental strand, 47255281 - 47254564
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctc 116  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  47255281 agattgtggttttgctatgcacttggtttatagactaggtctatattattgttgttgcttatggtttactttggttgttggttgccattgatacctgctc 47255182  T
Q  117 cacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttataaagcagtaagagataggtagagttaaaacaaagtcctaaaacat 216  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47255181 cacacatcatagtttatattggtgtgaaatttgaacc-gaattcacaacagttataaagcagtaagagataggtagagttaaaacaaagtcctaaaacat 47255083  T
Q  217 aaatttgaaatgtcaaaagaaaatagtttggttaaaaatatataacaaacattgaatcctctcaactgcttaagcttaagtagtnnnnnnnnnnn-gact 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||    
T  47255082 aaatttgaaatgtcaaaagaaaatagtttggttaaaaatatataacaaacattgaatcctctcaactgcttaagcttaagtagtaaaaaaaaaaaagact 47254983  T
Q  316 acagataaagtcaattttattttaacattatggagatcaagtgaatgtatatatgcctttctgtctaaagatcgcttagaaagtattcaatggtctgtgc 415  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47254982 acagacaaagtcaattttattttaacattatggagatcaagtgaatgtatatatgcctttctgtctaa-gatcgcttagaaagtattcaatggtctgtgc 47254884  T
Q  416 attaaagaagtacacacatcacaaaagacaaggagattacgttatattaaaccataattaacaaataagcttaattaggattccctttctcttgcttagt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47254883 attaaagaagtacacacatcacaaaagacaaggagattacgttatattaaaccataattaacaaataagcttaattaggattccctttctcttgcttagt 47254784  T
Q  516 caaaggacaggaataagattgttaatatgactccccctgcatgcagggatttaacatggagaagtcctaagcatgtggccacatgatcataatttctaac 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47254783 caaaggacaggaataagattgttaatatgactccccctgcatgcagggatttaacatggagaagtcctaagcatgtggccacatgaccataatttctaac 47254684  T
Q  616 catgtgacaactgaggttaaagattggagatatttatgaaatgaccaaaacatcctctatagaagttggtcacattgttctaaacaaagaaaaaccagtt 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47254683 catgtgacaactgaggttaaagattggagatatttatgaaatgaccaaaacatcctctatagaagttggtcacattgttctaaacaaagaaaaaccagtt 47254584  T
Q  716 gtgtgtatgatgtccatctc 735  Q
    |||||||| |||| ||||||    
T  47254583 gtgtgtatcatgttcatctc 47254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 13548944 - 13548792
Alignment:
Q  19 gattgtggttttgttatgcactt-ggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctc 116  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13548944 gattgtggttttgctatgcactttggtttatagactaggtctatattattgttgttgcttgtggtttactttggttgttggttgtcattgatacttgctc 13548845  T
Q  117 cacacatc--atagtttgtattggtgtgaaatttgag-tctgaattcacaaca 166  Q
    ||||||||  ||||||||||||||||||||||||||| || ||||||||||||    
T  13548844 cacacatcatatagtttgtattggtgtgaaatttgagttcagaattcacaaca 13548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 13547022 - 13546886
Alignment:
Q  35 tgcacttggtttatagacta---gtctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacat--catagt 129  Q
    ||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  13547022 tgcacttggtttataaactataggtctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacattatatagt 13546923  T
Q  130 ttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||| |||||||||| | ||||||||||||    
T  13546922 ttgtattggtgagaaatttgagaccgaattcacaaca 13546886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 194750 - 194845
Alignment:
Q  23 gtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcc 117  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  194750 gtggttttgatatgcacttggtttatagactaggtctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcc 194845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 19752931 - 19753032
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  19752931 ttgtcgttgcttgtggttaattttggttgttggttgccattgatacttgcttcgcacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 19753030  T
Q  165 ca 166  Q
    ||    
T  19753031 ca 19753032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 42297915 - 42297790
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcc 117  Q
    ||||||| ||||| ||||||||||||||||||||| | | |||||||||||| |||||| ||||| | ||||||||||||||||||||||||||| ||||    
T  42297915 gattgtgattttgctatgcacttggtttatagacttggtatatattattgttattgcttatggttaa-tttggttgttggttgccattgatactttctcc 42297817  T
Q  118 acacatcatagtttgtattggtgtgaa 144  Q
    ||||||||||||||| |||||||||||    
T  42297816 acacatcatagtttggattggtgtgaa 42297790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 37876709 - 37876573
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactt-----tggttgttggttgccattgatacttg 113  Q
    |||||||||||  ||||||||||||||||||||||| |||||| | ||||| |||||||||||||| ||     ||||| ||||||||||||||||||||    
T  37876709 attgtggtttttctatgcacttggtttatagactaggtctatagtgttgtttttgcttgtggtttatttacatttggttattggttgccattgatacttg 37876610  T
Q  114 ctccacacatc--atagtttgtattggtgtgaaattt 148  Q
    |||||||||||  ||||||||||||||||||||||||    
T  37876609 ctccacacatcatatagtttgtattggtgtgaaattt 37876573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 11348925 - 11349080
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtgg---tttac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||   ||||| |||| || ||  ||| ||||||||||||    
T  11348925 gattgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggttatttacatttgattattaattgtcattgatacttg 11349024  T
Q  114 ctccacacatc--atagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    |||||||||||  ||||||||||||||||| |||||||||| | ||||||||||||    
T  11349025 ctccacacatcatatagtttgtattggtgtaaaatttgagtcccgaattcacaaca 11349080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 31925650 - 31925553
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctc 116  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||||||||    
T  31925650 gattgtggttttgctatgcacttggtttatagactaggtctatattattgttattgcttgtgg-ttaatttggttgttggttgtcattgatacttgctc 31925553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 19754741 - 19754837
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattca 161  Q
    |||||||||||||||||| | ||| ||||  ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  19754741 ttgttgttgcttgtggttaattttagttggaggttgtcattgatacttgctccacacatcatagtttctattggtgtgaaatttgaatctgaattca 19754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 29136471 - 29136596
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtggt---tta-ctttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||||||||||||||| |||||| || ||||| |||||||||||   |||  ||||||| ||||||| ||||| |||||    
T  29136471 agattgtggttttgctatgcacttggtttatagactaggtctattttgttgttattgcttgtggttagttatatttggttattggttgtcattggtactt 29136570  T
Q  113 gctccacacatcatagtttgtattgg 138  Q
    ||||||||||||||||||||||||||    
T  29136571 gctccacacatcatagtttgtattgg 29136596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 37033009 - 37032860
Alignment:
Q  22 tgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatacttgctc 116  Q
    |||| ||||| |||||||||| ||| |||| ||| |||| ||| ||||| ||||||||||||   ||| ||||||| |||||||||||||||| ||||||    
T  37033009 tgtgattttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgccattgatatttgctc 37032910  T
Q  117 cacacatc--atagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    ||||||||  ||||||||||||| |||||||||||||   ||||||||||    
T  37032909 cacacatcatatagtttgtattgttgtgaaatttgagatcgaattcacaa 37032860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 834024 - 833970
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  834024 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 8550638 - 8550584
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  8550638 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 8550584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 28220077 - 28220026
Alignment:
Q  115 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  28220077 tccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 28220026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 28223276 - 28223221
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||    
T  28223276 ttgctccacacatcatagtttgtattggtctgagttttgagtccgaattcacaaca 28223221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 49918664 - 49918718
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||    
T  49918664 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaatttacaaca 49918718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 4552493 - 4552448
Alignment:
Q  121 catcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||    
T  4552493 catcatagtttgtattggtgtgaaatttgagtccgaattcgcaaca 4552448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 1833825 - 1833880
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtta 170  Q
    ||||||| |||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  1833825 ctccacagatcatagtttgtattggtgtgata-ttgagtccgaattcacaacagtta 1833880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 37168522 - 37168622
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| |||||||||| || ||||||||| ||||||| |||||||||||||| ||||   ||| ||||||| ||||||| ||||||||||||    
T  37168522 gattgtggttttgctatgcacttgatt-atagactaggtctatat-attgttgttgcttgaggttatttacatttggttattggttgtcattgatacttg 37168619  T
Q  114 ctc 116  Q
    |||    
T  37168620 ctc 37168622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 37503413 - 37503362
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  37503413 ctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 37503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 47115396 - 47115502
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtg---gtttac-tttggttgttggttgccattgatactt 112  Q
    ||||||||||||||||||||||||| ||| |||| ||| |||| ||| ||||| |||||||||    ||||| |||| |||||| ||| |||||||||||    
T  47115396 agattgtggttttgttatgcacttgttttctagattagatctagattgttgttattgcttgtgattatttacatttgattgttgattgtcattgatactt 47115495  T
Q  113 gctccac 119  Q
    |||||||    
T  47115496 gctccac 47115502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 196764 - 196710
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||| |||||||||||||| |||||||||  ||||||||||||    
T  196764 ttgctccacacatcataatttgtattggtgtg-aatttgagtacgaattcacaaca 196710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 13137835 - 13137780
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||| |||||||||||||||  |||||||| ||||| ||||||    
T  13137835 ttgctccacacatcataatttgtattggtgtgagttttgagtccgaatttacaaca 13137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 37559719 - 37559664
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||| |||||||||||| |||||||||||  |||||||| ||||||||||||    
T  37559719 ttgctccagacatcatagtttatattggtgtgagttttgagtccgaattcacaaca 37559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 40122055 - 40122001
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||    
T  40122055 ttgctccacgcatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 40122001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 45644212 - 45644158
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||    
T  45644212 ttgctccacacatcatagtttgtatttgtgtg-attttgagtccgaattcacaaca 45644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 20762982 - 20763014
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  20762982 ttgctccacacatcatagtttgtattggtgtga 20763014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 28265410 - 28265359
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||| |||||    
T  28265410 ctccacacatcatagtttgtattggtgtg-attttgagtccgaattcccaaca 28265359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 10925536 - 10925590
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||| |||||||||||||| |||| | |||||||| ||||||||||||    
T  10925536 ttgctccacacaacatagtttgtattgttgtg-attttgagtccgaattcacaaca 10925590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 30476298 - 30476247
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaac 165  Q
    |||||||||| |||||||||||||||||||  |||||||  |||||||||||    
T  30476298 ctccacacattatagtttgtattggtgtgagttttgagttcgaattcacaac 30476247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 13659205 - 13659153
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    ||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||    
T  13659205 ttgctccacacattatagtttgtattgatgtg-attttgagtccgaattcacaa 13659153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 28242528 - 28242635
Alignment:
Q  18 agattgtggtttt-gttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatact 111  Q
    ||||||||||||| | ||| |||||||||| || | ||| |||| ||| ||||||||||||| ||||   ||| ||||||| ||||||| ||||||||||    
T  28242528 agattgtggtttttgctattcacttggtttctaaattagatctagattgttgttgttgcttgaggttatttacatttggttattggttgtcattgatact 28242627  T
Q  112 tgctccac 119  Q
    ||||||||    
T  28242628 tgctccac 28242635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 7552 - 7687
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag---tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctc 116  Q
    |||||||||||| |||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7552 attgtggttttgctatgcacttggtttatagactaggtctatatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctc 7651  T
Q  117 cacacatcatagtttgtattggtgtgaaatttgagt 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  7652 cacacatcatagtttgtattggtgtgaaatttgagt 7687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 2360919 - 2360774
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcca 118  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2360919 attgtggttttgatatgcacttggtttctagactaggtctatattgatgttgttgcttgtgatttactttggttgttggttgccattgatacttgctcca 2360820  T
Q  119 cacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||    
T  2360819 cacatcatagtttgtattggtgtgaattttgagtccaaattcacaa 2360774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 6359893 - 6359762
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcc 117  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6359893 gattgtggttttgctatgcacttggtttatagactaggtatatattattgttgttgcttgtggtttactttggttgttggttcccattgatacttgctcc 6359794  T
Q  118 acacatcatagtttgtattggtgtgaaatttg 149  Q
    |||||||||||||||||||| |||||| ||||    
T  6359793 acacatcatagtttgtattgatgtgaagtttg 6359762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 32357997 - 32357848
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcca 118  Q
    ||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  32357997 attgtggttttgttatgcaattggattataaactaggtctatattattgttgttgcttgtggtttactttggttgttggttgtcattgatacttactcca 32357898  T
Q  119 cacatc--atagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||  ||| ||||||||||||||||||||| ||| ||||||||||||    
T  32357897 cacatcatataatttgtattggtgtgaaatttgtgtccgaattcacaaca 32357848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 4510491 - 4510339
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactt-----tggttgttggttgccattgatacttg 113  Q
    |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| |||||||||||||| ||     ||||| ||||||||||||||||||||    
T  4510491 attgtgtttttgctatgcacttgatttatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttg 4510392  T
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4510391 ctccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaaca 4510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 4512333 - 4512181
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactt-----tggttgttggttgccattgatacttg 113  Q
    |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| |||||||||||||| ||     ||||| ||||||||||||||||||||    
T  4512333 attgtgtttttgctatgcacttgatttatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttg 4512234  T
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4512233 ctccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaaca 4512181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 22270220 - 22270321
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||    
T  22270220 ttgttgttgcttgtggttaattttggttgttggttgccattgatacttgctccacacatcatagtttgtattgctgtgaaatttgagtccgaattcataa 22270319  T
Q  165 ca 166  Q
    ||    
T  22270320 ca 22270321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 30814669 - 30814770
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  30814669 ttgttgttgcttgtggttaattttggttgttggttgccattgatacttgctccacacatcatattttgtactggtgtgaaatttgagtccgaattcacaa 30814768  T
Q  165 ca 166  Q
    ||    
T  30814769 ca 30814770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 4508649 - 4508499
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactt-----tggttgttggttgccattgatacttg 113  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||     ||||| ||||||| ||||||||||||    
T  4508649 attgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggtttatttatatttggttattggttggcattgatacttg 4508550  T
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    || || || ||||||||||||||||||||||||||||| | ||||||||||    
T  4508549 cttcatacttcatagtttgtattggtgtgaaatttgagaccgaattcacaa 4508499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 34310657 - 34310544
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggt----ttac-tttggttgttggttgccattgatacttg 113  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||    |||| ||||||| ||||||| ||||||||||||    
T  34310657 attgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggtctatttacatttggttattggttgtcattgatacttg 34310558  T
Q  114 ctccacacatcata 127  Q
    ||||||||||||||    
T  34310557 ctccacacatcata 34310544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 8359260 - 8359157
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttgg-ttgttggttgccattgatacttgct 115  Q
    |||||||||||||| |||||||||| ||| |||| ||| |||| ||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  8359260 agattgtggttttgctatgcacttgttttctagattagatctagattgttgttgttgcttgtgatttacttttgattgttggttgccattgatacttgct 8359161  T
Q  116 ccac 119  Q
    ||||    
T  8359160 ccac 8359157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 6430431 - 6430496
Alignment:
Q  101 ccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  6430431 ccattgatacttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 6430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 19502492 - 19502549
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 168  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  19502492 ttgctccacacatcatagtttgtattagtgtgagttttgagtctgaattcacaacagt 19502549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 14069688 - 14069633
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  14069688 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 14069633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 14379716 - 14379661
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  14379716 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 14379661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 23555355 - 23555410
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  23555355 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 23555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 31732823 - 31732766
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 168  Q
    |||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||    
T  31732823 ttgctccacacatcatagtttgtactggtgtgagttttgagtccgaattcacaacagt 31732766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 18126963 - 18127015
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  18126963 ctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 18127015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 41317293 - 41317237
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacag 167  Q
    |||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||    
T  41317293 ttgctccaaacatcatagtttgtattggtgtgagatttgagttcgaattcacaacag 41317237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 4586475 - 4586530
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||    
T  4586475 ttgctccacacatcatagtttacattggtgtgagatttgagtccgaattcacaaca 4586530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 38671079 - 38671025
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  38671079 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 41648868 - 41648814
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  41648868 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 41648814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 47675991 - 47675936
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||| ||| ||||||||||||    
T  47675991 ttgctccacacatcatagtttgtattggtgtgagttttgtgtccgaattcacaaca 47675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 26417633 - 26417685
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||| ||||||||||||||||||||||  |||||||| ||||||||||||    
T  26417633 ctccacatatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 43864561 - 43864609
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcac 162  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  43864561 ctccacacatcatagtttgtattggtgtgagttttgagtccgaattcac 43864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 1113966 - 1114021
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||| |||||  ||||| || ||||||||||||    
T  1113966 ttgctccacacatcatagtttgtattgatgtgagttttgattcggaattcacaaca 1114021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 36146266 - 36146212
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||| |||| || |||||||| ||||||||||||    
T  36146266 ttgctccacacatcatagtttgtatttgtgt-aattttgagtccgaattcacaaca 36146212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 48489745 - 48489798
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaac 165  Q
    |||||||||||||||||||| ||||||||||| | |||||||| |||||||||||    
T  48489745 ttgctccacacatcatagttggtattggtgtg-attttgagtccgaattcacaac 48489798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 4179087 - 4179119
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  4179087 ttgctccacacatcatagtttgtattggtgtga 4179119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 29991367 - 29991399
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  29991367 ttgctccacacatcatagtttgtattggtgtga 29991399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 27348131 - 27348185
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||| |||||||| ||||| | |||||||| ||||||||||||    
T  27348131 ttgctccacacatcataatttgtatttgtgtg-attttgagtccgaattcacaaca 27348185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 35854230 - 35854288
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtct-gaattcacaacagtt 169  Q
    |||||||||||||||||||||||||| ||||| | |||||| || |||||||||||||||    
T  35854230 ttgctccacacatcatagtttgtatttgtgtg-attttgagactggaattcacaacagtt 35854288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 47673795 - 47673744
Alignment:
Q  115 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||  |||| ||| ||||||| ||||    
T  47673795 tccacacatcatagtttgtattggtgtgagttttgtgtccgaattcataaca 47673744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 48599237 - 48599175
Alignment:
Q  58 tatattattgttgttgcttgtggtttactttggttgtt-ggttgccattgatacttgctccac 119  Q
    |||||||||||||||| |||||||| || ||  ||||| ||||| ||||||||||||||||||    
T  48599237 tatattattgttgttgtttgtggttaacattttttgtttggttgtcattgatacttgctccac 48599175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 3259219 - 3259322
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| ||||| | || ||| |||| ||| |||| ||| ||||| ||||||||||||   ||| ||||||| ||||||| ||||||||||||    
T  3259219 gattgtggttttgctatgcccgtgttttctagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgtcattgatacttg 3259318  T
Q  114 ctcc 117  Q
    ||||    
T  3259319 ctcc 3259322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 5e-52; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 31340165 - 31340018
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcc 117  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31340165 gattgtggttttgctatgcacttggtttatagactaggtctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacatgctcc 31340066  T
Q  118 acacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||| ||||||||||||||||| || |||||||  | ||||||||||    
T  31340065 acacattatagtttgtattggtgt-aattttgagtacgcattcacaaca 31340018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 47304482 - 47304607
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcc 117  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  47304482 gattgtggttttgctatgcacttggtttatagactaggtctatattattgttgttgcttgtgatttactttggttgttggttgtcattgatacttgctcc 47304581  T
Q  118 acacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||| |||||    
T  47304582 acacatcatagtttgtattgttgtga 47304607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 6095543 - 6095390
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| ||||||||||||   ||| |||| || ||||||||||||||||||||    
T  6095543 gattgtggttttgctatacacttcgtttatagactaggtctatattgttgttattgcttgtggttatttacatttgattattggttgccattgatacttg 6095444  T
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  6095443 ctccacacatcatagtttgtattggtgtgaaatttgagtcccgaattcacaaca 6095390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 40913545 - 40913646
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||    
T  40913545 ttgttgtggcttgtggtttactttggttgttggtcgccattgatacttgctccgcacattattgtttgtattggtgtgaaatttgagtccgaattcacaa 40913644  T
Q  165 ca 166  Q
    ||    
T  40913645 ca 40913646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 46173583 - 46173688
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag---tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgct 115  Q
    ||||||||||||| ||||||||||||||||||| |||   | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46173583 gattgtggttttgctatgcacttggtttatagaataggtttatatattattgctgttgcttgtggtttactttggttgttggttgccattgatacttgct 46173682  T
Q  116 ccacac 121  Q
    ||||||    
T  46173683 ccacac 46173688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 30236350 - 30236504
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtggttta-----ctttggttgttggttgccattgatactt 112  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |      ||||||||||||||| |||||||||||    
T  30236350 gattgtgtttttgttatgcacttggtttatagactaggtctatattgttgttgttgcttgtggttaatcaatttttggttgttggttgacattgatactt 30236449  T
Q  113 gctccacacatcatagtt-tgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||| | ||| | |||||||||||||||||||   ||||||||||||    
T  30236450 gctccacacatctttgttatttattggtgtgaaatttgagatcgaattcacaaca 30236504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 34491459 - 34491557
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcaca 163  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  34491459 ttgttgttgcttgtggttcattttggttgttggttgccattaatacttgctccacacattatagtttgtattggtgtaaaatttgagtccgaattcaca 34491557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 43403684 - 43403530
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||| ||| |||| ||| || || ||||||||||||   ||| ||||||| |||||||||||||||||||    
T  43403684 agattgtggttttgctatgcacttgttttctagattagatctagattgttattattgcttgtggttatttacatttggttattggttgccattgatactt 43403585  T
Q  113 gctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  43403584 gctccacacatcatagtttgtattggtgtgaaattttagtccggaattcacaaca 43403530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 41819466 - 41819363
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttacttt-ggttgttggttgccattgatacttgct 115  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  41819466 agattgtggttttgctatgcacttggtttatggactaggtctatattgttgttgttgcttgtgatttacttttggttgttggttgccattgatacttgct 41819367  T
Q  116 ccac 119  Q
    ||||    
T  41819366 ccac 41819363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 43401741 - 43401601
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatactt 112  Q
    |||||||| ||||| |||||||||| ||| |||| ||| |||| ||| ||||| ||||||||||||   ||| ||||||| |||||||||||||||||||    
T  43401741 agattgtgattttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgccattgatactt 43401642  T
Q  113 gctccacacatcatagtttgtattggtgtgaaatttgagtc 153  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  43401641 gctccacagatcatagttggtattggtgtgaaatttgagtc 43401601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 49199409 - 49199254
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||| ||| |||| ||| ||||| ||||||||||||   ||| ||||||| |||||||||||||||||||    
T  49199409 agattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgccattgatactt 49199310  T
Q  113 gctccacacatc--atagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||  ||| ||||||||| ||||||||||||| | ||||||||||||    
T  49199309 gctccacacatcatataatttgtattgctgtgaaatttgagaccgaattcacaaca 49199254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 54593931 - 54594086
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||| ||||| ||||||||||||   ||  ||||||| ||||||| ||||||||||||    
T  54593931 gattgtggttttgctatgcacatggtttatagactatgtctatattcttgttattgcttgtggttatttatatttggttattggttgtcattgatacttg 54594030  T
Q  114 ctccacacatcata--gtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    ||| ||| ||||||  ||||||||||||||||||||||||| | ||||||||||||    
T  54594031 ctctacatatcatatagtttgtattggtgtgaaatttgagtcccgaattcacaaca 54594086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 46860698 - 46860804
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtgg---tttac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||| ||||||   ||||| ||||||| |||||||||||||||| ||    
T  46860698 agattgtggttttgctatgcacttggtttatagattaggtctatattgttgttgttgtttgtggttatttacatttggttattggttgccattgatattt 46860797  T
Q  113 gctccac 119  Q
    |||||||    
T  46860798 gctccac 46860804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 29196244 - 29196189
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29196244 ttgctccacacatcatagtttgtattggtgtgagatttgagtccgaattcacaaca 29196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 55301914 - 55301758
Alignment:
Q  20 attgtggttttgttatgcacttggttta-tagactag-tctatattattgttgttgcttgtggtttact-----ttggttgttggttgccattgatactt 112  Q
    ||||||| |||| ||||||||||||||  |||| ||| |||| ||| || || |||||||||||||| |     |||||| ||||||| |||||||||||    
T  55301914 attgtggctttgctatgcacttggttttctagattagatctagattgtttttattgcttgtggtttattcacatttggttattggttgtcattgatactt 55301815  T
Q  113 gctccacacatc--atagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    ||||||||| ||  ||| |||||||||||||||||||||||| | ||||||||||||    
T  55301814 gctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 55301758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 29813375 - 29813430
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  29813375 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 29813430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 761158 - 761211
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  761158 ttgctccacacatcatagtttgtattggtgtg--atttgagtccgaattcacaaca 761211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 22834861 - 22834807
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  22834861 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 22834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 5236308 - 5236257
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  5236308 ctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 5236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 9666324 - 9666270
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||    
T  9666324 ttgctccacagatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 29682670 - 29682729
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga-aatttgagtctgaattcacaacagtt 169  Q
    |||||||||||||||||||||||||||||||||   |||| ||| |||||||||||||||    
T  29682670 ttgctccacacatcatagtttgtattggtgtgattttttgtgtcggaattcacaacagtt 29682729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 39153219 - 39153164
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||| | |||||| |||||    
T  39153219 ttgctccacacatcatagtttgtattggtgtgagttttgagcccgaattctcaaca 39153164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 40734811 - 40734865
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||| | ||||||||||||    
T  40734811 ttgctccacacatcatagtttgtattggtgtg-attttgagaccgaattcacaaca 40734865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 4160105 - 4160059
Alignment:
Q  120 acatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  4160105 acatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 4160059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 5433839 - 5433786
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccac 119  Q
    |||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||    
T  5433839 ttgttgttgcttgtggtt-attttggttattggttgtcattgatacttgctccac 5433786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 50432516 - 50432478
Alignment:
Q  86 tttggttgttggttgccattgatacttgctccacacatc 124  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  50432516 tttggttgttggttgccattgatatttgctccacacatc 50432478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 23391764 - 23391707
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 171  Q
    ||||||||||||||||||||||||||||||  |||| ||  |||||||||||| ||||    
T  23391764 ctccacacatcatagtttgtattggtgtgagttttgtgttcgaattcacaacaattat 23391707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 9635978 - 9635946
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  9635978 ttgctccacacatcatagtttgtattggtgtga 9635946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 23410182 - 23410131
Alignment:
Q  115 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||| |||||  |||| ||| ||||||||||||    
T  23410182 tccacacatcatagtttgtattgatgtgagttttgtgtccgaattcacaaca 23410131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 29811182 - 29811237
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||| |||||| |||||||||||||||  |||||||  ||||||||||||    
T  29811182 ttgctccacaaatcatattttgtattggtgtgagttttgagttcgaattcacaaca 29811237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 31314754 - 31314808
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||| ||||||||||||||||||||||| | |||||||| | ||||||||||    
T  31314754 ttgctccatacatcatagtttgtattggtgtg-attttgagtcggtattcacaaca 31314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 37408773 - 37408831
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtta 170  Q
    ||||||||||||||||| ||||||||| |||| | |||||| | ||||||||||||||||    
T  37408773 ttgctccacacatcatattttgtattgatgtg-actttgaggccgaattcacaacagtta 37408831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 51399128 - 51399182
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||| |||||||||||||||||||| || | |||||||| ||||||||||||    
T  51399128 ttgctccatacatcatagtttgtattggtatg-attttgagtccgaattcacaaca 51399182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 4570210 - 4570273
Alignment:
Q  109 acttgctccacacatcatag----tttgtattggtgtgaaatttgag-tctgaattcacaacag 167  Q
    |||||||||||||||||||     ||||||||||||||||||||||| || |||||||||||||    
T  4570210 acttgctccacacatcatatataatttgtattggtgtgaaatttgagttcagaattcacaacag 4570273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 7762580 - 7762610
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgt 141  Q
    |||||||||||||||||||||||||||||||    
T  7762580 ttgctccacacatcatagtttgtattggtgt 7762610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 45727151 - 45727305
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactt-----tggttgttggttgccattgatactt 112  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||     ||||| || ||||||||||||||||    
T  45727151 gattgtggttttgctatgcacttagtttatagactaggtctatattattgttgttgcttgtggtttatttacatttggttattagttgccattgatactt 45727250  T
Q  113 gctccacacatcata--gtttgtattggtgtgaaatttgagtctgaattcacaac 165  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  45727251 gctccacacatcatatagtttgtattggtgtgaaatttgagtctgaattcacaac 45727305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 35446827 - 35446677
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag---tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctc 116  Q
    |||||||||||| |||||||||| || |||||||||   | |||||| |||||||||  |||||||||||||||||||||||||  ||||||||||||||    
T  35446827 attgtggttttgctatgcacttgatt-atagactagatctatatattgttgttgttgagtgtggtttactttggttgttggttgggattgatacttgctc 35446729  T
Q  117 cacacatc--atagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||  ||||||| ||||| ||||||||||||||| ||||||||||||    
T  35446728 cacacatcatatagtttatattgatgtgaaatttgagtcagaattcacaaca 35446677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 29868182 - 29868237
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  29868182 ttgctccacacatcatagtttgtattgctgtgaaatttgagtccgaattcacaaca 29868237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 2334272 - 2334211
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttataa 173  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  2334272 ttgcttcacacatcatagtttgtattggtgtg-attttgagtctgaattcacaacagttataa 2334211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 1631637 - 1631538
Alignment:
Q  58 tatattattgttgttgcttgtggtttactt-----tggttgttggttgccattgatacttgctccacacatc--atagtttgtattggtgtgaaatttga 150  Q
    |||||| ||||| |||||||||||||| ||     ||||||||||||| ||||||||||| |||||||||||  ||||||||||||| ||||||||||||    
T  1631637 tatattgttgttattgcttgtggtttatttatatttggttgttggttgtcattgatacttactccacacatcatatagtttgtattgatgtgaaatttga 1631538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 11690801 - 11690856
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  11690801 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 11690856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 17450800 - 17450898
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtggtttac-tttggttgttggttgccattgatacttgc 114  Q
    |||||||||||||| |||||||||||||| |||| || || || ||| ||||||||||||||| ||||| ||||||| | ||||| |||||||||||||    
T  17450800 agattgtggttttgctatgcacttggtttctagattaggtttagattgttgttgttgcttgtgatttacatttggttatcggttgtcattgatacttgc 17450898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 723601 - 723547
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  723601 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 723547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 34139627 - 34139573
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  34139627 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 34139573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 36987929 - 36987875
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  36987929 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 36987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 42362659 - 42362713
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  42362659 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 11151450 - 11151393
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 168  Q
    ||||||||||||||||||||||||||||| |||  |||||||  ||||||||||||||    
T  11151450 ttgctccacacatcatagtttgtattggtatgagttttgagttcgaattcacaacagt 11151393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 6594858 - 6594804
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||||||||    
T  6594858 ttgctccacacatcatagtttgtattggtgtg-attttgagtccaaattcacaaca 6594804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 14633682 - 14633628
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  14633682 ttgcttcacacatcatagtttgtattggtgtg-attttgagtctgaaatcacaaca 14633628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 24885899 - 24885953
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  24885899 ttgctacacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 33162308 - 33162254
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  33162308 ttgctccacacatcatagtttgtattgatgtg-attttgagtccgaattcacaaca 33162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 36773872 - 36773926
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | ||||| || ||||||||||||    
T  36773872 ttgctccacacatcatagtttgtattggtgtg-attttgaatccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 5723110 - 5723078
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  5723110 ttgctccacacatcatagtttgtattggtgtga 5723078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 7451343 - 7451407
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt 82  Q
    |||||||||||||||||||||||| ||| |||| ||| |||| ||| ||||| ||||||||||||    
T  7451343 gattgtggttttgttatgcacttgttttctagattagatctagattgttgttattgcttgtggtt 7451407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 17057223 - 17057164
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 171  Q
    |||||| |||||||||| |||||||||||||| | |||||||| |||||||||||| ||||    
T  17057223 ttgctctacacatcatattttgtattggtgtg-attttgagtccgaattcacaacaattat 17057164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 17085206 - 17085147
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 171  Q
    |||||| |||||||||| |||||||||||||| | |||||||| |||||||||||| ||||    
T  17085206 ttgctctacacatcatattttgtattggtgtg-attttgagtccgaattcacaacaattat 17085147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 42288054 - 42287953
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||  |||||||||| ||| |||| ||| |||| ||| ||||| ||||||||||||   ||| ||||||| |||||||||||||||| |||    
T  42288054 gattgtggtttttctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgccattgatatttg 42287955  T
Q  114 ct 115  Q
    ||    
T  42287954 ct 42287953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 7e-45; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 21589155 - 21589308
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttac----tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||    |||||||||||||| |||||||||||||    
T  21589155 gattgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggttaacattttttggttgttggtttccattgatacttg 21589254  T
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  21589255 ctccacacatcatagtttatattggtgtgaaatttgagtccagaattcacaaca 21589308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 603004 - 602903
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  603004 ttgttgttgcttgtggtttattttgattgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 602905  T
Q  165 ca 166  Q
    ||    
T  602904 ca 602903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 17758248 - 17758402
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||| ||| |||| ||| ||||| ||||||| ||||   ||| ||||||| |||||||||||||||||||    
T  17758248 agattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgcttgcggttatttacatttggttattggttgccattgatactt 17758347  T
Q  113 gctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  17758348 gctccacacatcatagtttgtattggtgtgaaatttgagtcccgaattcacaaca 17758402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 26830064 - 26829925
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||| ||||| ||||||||||||   ||| ||||||| |||||| |||||||||||||    
T  26830064 gattgtggttttgctatgcacttggtttatagactaggtttatattgttgttattgcttgtggttatttacatttggttattggtttccattgatacttg 26829965  T
Q  114 ctccacacatc--atagtttgtattggtgtgaaatttgag 151  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  26829964 ctccacacatcatatagtttgtattggtgtgaaatttgag 26829925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 22424770 - 22424620
Alignment:
Q  18 agattgtggttttgtt--atgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatac 110  Q
    ||||||||||||| ||  ||||||||||||| || | ||| |||| ||| ||||||||| ||||||||   ||| ||||||| |||||| ||||||||||    
T  22424770 agattgtggtttttttcaatgcacttggtttctatattagatctagattgttgttgttgtttgtggttatttacatttggttattggttaccattgatac 22424671  T
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattca 161  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  22424670 ttgctccacacatcatagtttgtattaatgtgaaatttgagtccgaattca 22424620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 5043852 - 5044006
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag---tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatact 111  Q
    ||||||||||||| |||||||||| || ||||| |||   | |||||| ||||||||||||| ||||   ||| ||||||| ||||||| |||||||||     
T  5043852 gattgtggttttgctatgcacttgatt-atagaataggtctatatattgttgttgttgcttgaggttatttacatttggttattggttgtcattgatacg 5043950  T
Q  112 tgctccacacatcatagtttgtattggtgtgaaatttgagtc-tgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  5043951 tgctccacacatcatagtttgtattggtgtgaaatttaagtcaggaattcacaaca 5044006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 17763288 - 17763369
Alignment:
Q  86 tttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  17763288 tttggttattggttgtcattgatacttgctccacacatcatagtttatattggtgtgaaatttgagtcccgaattcacaaca 17763369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 26800811 - 26800917
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggt---ttac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||||||| |||| ||| ||||| |||||||||||   |||| ||||||| |||||||||||||||||||    
T  26800811 agattgtggttttgctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttgccattgatactt 26800910  T
Q  113 gctccac 119  Q
    |||||||    
T  26800911 gctccac 26800917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 3808567 - 3808518
Alignment:
Q  94 ttggttgccattgatacttgctccacacatcatagtttgtattggtgtga 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3808567 ttggttgccattgatacttgctccacatatcatagtttgtattggtgtga 3808518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 2972881 - 2972777
Alignment:
Q  18 agattgtggttttgt-tatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatact 111  Q
    ||||||||||||| | ||||||||| ||||||||||||| |||||||| ||||||||| ||||||||   ||| |||| || ||||||||||||||||||    
T  2972881 agattgtggttttttctatgcacttagtttatagactaggtctatattgttgttgttgtttgtggttatttacatttgattattggttgccattgatact 2972782  T
Q  112 tgctc 116  Q
    |||||    
T  2972781 tgctc 2972777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 26954145 - 26954091
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  26954145 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 22963561 - 22963508
Alignment:
Q  113 gctccacacatcatagtttgtattggtgtgaaatttgagtct-gaattcacaaca 166  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  22963561 gctccacacatcatagtttgtattggtgtg-attttgagtctggaattcacaaca 22963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 23824832 - 23824885
Alignment:
Q  113 gctccacacatcatagtttgtattggtgtgaaatttgagtct-gaattcacaaca 166  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  23824832 gctccacacatcatagtttgtattggtgtg-attttgagtctggaattcacaaca 23824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 5408924 - 5408892
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  5408924 ttgctccacacatcatagtttgtattggtgtga 5408892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 5413249 - 5413217
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  5413249 ttgctccacacatcatagtttgtattggtgtga 5413217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 14521532 - 14521478
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||  ||||||||||  |||||||| ||||||||||||    
T  14521532 ttgctccacacatcatagtttc-attggtgtgagttttgagtccgaattcacaaca 14521478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 28137265 - 28137211
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||| |||||||||||||||||||| | |||||| | ||||||||||||    
T  28137265 ttgctccacacgtcatagtttgtattggtgtg-attttgagaccgaattcacaaca 28137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 5406054 - 5406025
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtga 143  Q
    ||||||||||||||||||||||||||||||    
T  5406054 ctccacacatcatagtttgtattggtgtga 5406025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 5410379 - 5410350
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtga 143  Q
    ||||||||||||||||||||||||||||||    
T  5410379 ctccacacatcatagtttgtattggtgtga 5410350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 33211053 - 33211005
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcaca 163  Q
    |||||||||| ||||||| |||||||||||| |||||||| |||||||||    
T  33211053 ctccacacattatagtttatattggtgtgaattttgagtc-gaattcaca 33211005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 41639651 - 41639801
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagacta-gtctatat---tattgttgttgcttgtggtttac-tttggttgttggttgccattgatacttgc 114  Q
    |||||||||||| ||||||||| | |||||||||| ||||||||     ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  41639651 attgtggttttgctatgcactt-gattatagactaggtctatatatcatttgttgttgcttgtggtttacatttggttattggttgccattgatacttgc 41639749  T
Q  115 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41639750 tccacacatcatagtttgtattgatgtgaaatttgagtctgaattcacaaca 41639801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 21688470 - 21688605
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttac-tttggttgttggttgccattgatacttgctc 116  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |  ||| ||||||| ||| |||||||||||||||    
T  21688470 gattgtggttttgttatgcatttgatttatagactagatctatattattgttgttgcttgtggttaatatttagttgttgattgtcattgatacttgctc 21688569  T
Q  117 cacacatcatagtttgtattggtgtgaaatttgagt 152  Q
    |||||||||||||||||||| |||| ||||||||||    
T  21688570 cacacatcatagtttgtattagtgtaaaatttgagt 21688605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 50262599 - 50262487
Alignment:
Q  58 tatattattgttgttgcttgtggtttacttt----ggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtc 153  Q
    |||||| |||||||||||||||||| | |||    | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50262599 tatattgttgttgttgcttgtggttaattttttttgcttgttggttgtcattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtc 50262500  T
Q  154 tgaattcacaaca 166  Q
    |||||||||||||    
T  50262499 tgaattcacaaca 50262487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 2209942 - 2210082
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||| ||| |||| ||| ||||| ||| ||||||||   ||| ||||||| |||||||||||||||||||    
T  2209942 agattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgtttgtggttatttacatttggttattggttgccattgatactt 2210041  T
Q  113 gctccacacatcatagtttgtattggtgtgaaatttgagtc 153  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2210042 gctccacacatcatagtttgtattggtgtgaaatttgagtc 2210082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 35662665 - 35662767
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcc 117  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||    
T  35662665 gattgtggttttgctatgcacttggtttatagactatgtctatattgttgttgttgcttatggttaattttggttgttggttgccattgatacttgctcc 35662764  T
Q  118 aca 120  Q
    |||    
T  35662765 aca 35662767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 40632670 - 40632834
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactt-----tggttgttggttgccattgatacttg 113  Q
    ||||||||||||  ||||||||||| |||||||||| |||||||| ||||| |||||||||||||| ||     ||||| ||||||||||||||||||||    
T  40632670 attgtggttttgccatgcacttggtatatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttg 40632769  T
Q  114 ctccacacatc--atagtttgtattggtgtgaaatttgagt-ctgaattcacaacagttataaag 175  Q
    ||| |||||||  |||||||||||||||||| ||||||||| | |||||||||||| | ||||||    
T  40632770 ctctacacatcatatagtttgtattggtgtgtaatttgagtccggaattcacaacactaataaag 40632834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 50673790 - 50673638
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggt---ttac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| |||||||||| || ||||||||| |||||||| ||||| |||||| ||||   |||| ||||||| ||||||| ||||||||||||    
T  50673790 gattgtggttttgctatgcacttgatt-atagactagatctatattgttgttattgcttatggtgatttacatttggttattggttgacattgatacttg 50673692  T
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    |||||||||||||| ||||||||  |||| ||||||||| | ||||||||||||    
T  50673691 ctccacacatcataatttgtattaatgtgtaatttgagtccggaattcacaaca 50673638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 12073616 - 12073721
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggttta--ctttggttgttggttgccattgatacttgc 114  Q
    ||||||||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||  | |||||||||  |||||||||||||||||    
T  12073616 agattgtggttttgttatgcacttggtttctagattagatctagattgttgttgttgcttgtggtttattccttggttgtttattgccattgatacttgc 12073715  T
Q  115 tccaca 120  Q
    ||||||    
T  12073716 tccaca 12073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 379604 - 379710
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtgg---tttac-tttggttgttggttgccattgatactt 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||   ||||| |||| || |||||||||| ||||||||    
T  379604 agattgtggttttgttatgcacttggtttatagactaggtctatattgttgttgttgtttgtggttatttacatttgattattggttgccactgatactt 379703  T
Q  113 gctccac 119  Q
    |||||||    
T  379704 gctccac 379710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 6656201 - 6656305
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttg--tattggtgtgaaatttgagt-ctgaattca 161  Q
    |||||||||||||||  | | |||||||||||| || |||||||||||||||||||||||||||||||  ||||| |||||||||||||| | |||||||    
T  6656201 ttgttgttgcttgtgtctaattttggttgttggatgtcattgatacttgctccacacatcatagtttgtttattgatgtgaaatttgagtccggaattca 6656300  T
Q  162 caaca 166  Q
    |||||    
T  6656301 caaca 6656305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 54881565 - 54881629
Alignment:
Q  55 gtctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccac 119  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  54881565 gtctatattgttgttattgcttgtggtttattttggttgttggttgtcattgatacttgctccac 54881629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 41964637 - 41964743
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||| ||| |||| ||| ||||| ||||||||||||   ||| |||| ||||||||||||||||||||||    
T  41964637 agattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttgattgttggttgccattgatactt 41964736  T
Q  113 gctccac 119  Q
    |||||||    
T  41964737 gctccac 41964743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 26175491 - 26175436
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  26175491 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 12739405 - 12739353
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  12739405 ctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 12739353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 37740940 - 37740996
Alignment:
Q  112 tgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 168  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||| ||||||||    
T  37740940 tgctccacacatcatagtttgtattggtgtgagttttgagtccgaatttacaacagt 37740996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 55085385 - 55085286
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctcc 117  Q
    ||||||||||||| |||||||||||||| || | ||| |||| ||| ||||| |||||||| ||| | |||| |||||||||| ||||||||||||||||    
T  55085385 gattgtggttttgctatgcacttggtttctaaattagatctagattgttgttattgcttgtagttaa-tttgattgttggttgtcattgatacttgctcc 55085287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 12743783 - 12743728
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||| ||||||||||||||||||||  |||||||| ||||||||||||    
T  12743783 ttgctccacacaacatagtttgtattggtgtgagttttgagtccgaattcacaaca 12743728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 45687041 - 45686987
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  45687041 ttgctccatacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 45686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 48893497 - 48893443
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  48893497 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 33990079 - 33990164
Alignment:
Q  28 tttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttg 113  Q
    |||| |||||||||||||| |||| ||| |||| ||| ||||||||||||||| |||| ||||||| ||| ||||||||||||||||    
T  33990079 tttgctatgcacttggtttctagattagatctagattgttgttgttgcttgtg-tttattttggttattgattgccattgatacttg 33990164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 52467212 - 52467159
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    ||||| |||||||||||||||||||||||||||  |||||||| ||||||||||    
T  52467212 ttgcttcacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 52467159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 56178490 - 56178438
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  56178490 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 9927313 - 9927258
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||| |||||||| ||  |||||||| ||||||||||||    
T  9927313 ttgctccacacatcatagtttatattggtgcgagttttgagtccgaattcacaaca 9927258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 36994851 - 36994898
Alignment:
Q  119 cacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||    
T  36994851 cacatcatagtttgtattggtgtgagttttgagtcagaattcacaaca 36994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 46147250 - 46147195
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||| ||||||||||  |||||| | ||||||||||||    
T  46147250 ttgctccacacatcatagtttgcattggtgtgagttttgaggcggaattcacaaca 46147195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 8665632 - 8665734
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactagtctatattattgttgttgcttgtggtttac-------tttggttgttggttgccattgatact 111  Q
    ||||||||||||| |||||| ||| || ||||| ||| ||||||| |||||||||||||||||| |        ||||||||||||||||||||||||||    
T  8665632 gattgtggttttgctatgcatttgatt-ataga-tagactatattgttgttgttgcttgtggttaatcaatttttttggttgttggttgccattgatact 8665729  T
Q  112 tgctc 116  Q
    |||||    
T  8665730 tgctc 8665734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 54199762 - 54199705
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtt 169  Q
    |||||||| ||||||| ||||||||||||||| | |||||||| |||||||||||||||    
T  54199762 ttgctccatacatcatcgtttgtattggtgtg-attttgagtccgaattcacaacagtt 54199705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 29999683 - 29999651
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  29999683 ttgctccacacatcatagtttgtattggtgtga 29999651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 36463247 - 36463196
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||| ||||| | |||||||| ||||||||||||    
T  36463247 ctccacacatcatagtttgtattagtgtg-attttgagtccgaattcacaaca 36463196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 48143362 - 48143394
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtga 143  Q
    |||||||||||||||||||||||||||||||||    
T  48143362 ttgctccacacatcatagtttgtattggtgtga 48143394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 52082513 - 52082463
Alignment:
Q  115 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||| |||||||||||||| | |||||||| ||||||||||||    
T  52082513 tccacacatcataatttgtattggtgtg-attttgagtccgaattcacaaca 52082463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 52095212 - 52095162
Alignment:
Q  115 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||| |||||||||||||||||||| | |||||||| ||||||||||||    
T  52095212 tccacacgtcatagtttgtattggtgtg-attttgagtccgaattcacaaca 52095162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 8648443 - 8648473
Alignment:
Q  86 tttggttgttggttgccattgatacttgctc 116  Q
    |||||||||||||||||||||||||||||||    
T  8648443 tttggttgttggttgccattgatacttgctc 8648473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 5369933 - 5369904
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtga 143  Q
    ||||||||||||||||||||||||||||||    
T  5369933 ctccacacatcatagtttgtattggtgtga 5369904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 31474460 - 31474512
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||| |||||||||| ||||||||||||||||   ||||||| ||||||||||||    
T  31474460 ttgctacacacatcattgtttgtattggtgtga---ttgagtccgaattcacaaca 31474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 41961669 - 41961725
Alignment:
Q  63 tattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccaca 120  Q
    |||||||||||||||| ||||  ||||||| ||||||| ||||||||||||| |||||    
T  41961669 tattgttgttgcttgtagtttt-tttggttattggttgtcattgatacttgccccaca 41961725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 40751202 - 40751351
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttac-tttggttgttggttgccattgatacttgctcc 117  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||| ||||||| ||||||| ||||||||||| ||||    
T  40751202 attgtggttttgctatgcacttggtttatagattaggtctatattgttgttattgcttgtggtttacatttggttattggttgtcattgatacttactcc 40751301  T
Q  118 acacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    ||| |||||||||||||||||||||| |||| ||| | ||||||||||||    
T  40751302 acaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 40751351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 38747251 - 38747355
Alignment:
Q  65 ttgttgttgcttgtggtttactttg-gttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcaca 163  Q
    |||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  38747251 ttgttgttgcttgtggttaattttgtgatgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtccaaattcaca 38747350  T
Q  164 acagt 168  Q
    |||||    
T  38747351 acagt 38747355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 28278563 - 28278651
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtc 153  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28278563 ttgttgttgcttgtggttaattttgtttgttggttgccattgatacttgctccacacatcatattttgtattggtgtgaaatttgagtc 28278651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 27015747 - 27015878
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagactag---tctatattattgttgttgcttgtggtttactttggttgttggttgccattgatacttgctc 116  Q
    |||||||||||| |||||||||| || |||||||||   | |||||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  27015747 attgtggttttgatatgcacttgatt-atagactaggtatatatattgttgttgttgcttgtgatttactttggttgttgattgccattaatacttgctc 27015845  T
Q  117 cacacatcatagtttgtattggtgtgaaatttg 149  Q
    ||| ||||||||||||| ||| |||||||||||    
T  27015846 cacccatcatagtttgttttgctgtgaaatttg 27015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 40147509 - 40147610
Alignment:
Q  65 ttgttgttgcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    |||||| |||||||||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  40147509 ttgttgctgcttgtggtttaacttggttgttggtttccattaatacttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 40147608  T
Q  165 ca 166  Q
    ||    
T  40147609 ca 40147610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 40763211 - 40763356
Alignment:
Q  24 tggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtttac-tttggttgttggttgccattgatacttgctccacac 121  Q
    |||||||| ||||||||||||||||||| ||| |||||||| ||||| |||||| |||||||| |||| || ||||||| |||||||||||||||||||     
T  40763211 tggttttgctatgcacttggtttatagattaggtctatattgttgttattgcttatggtttacatttgattattggttgtcattgatacttgctccacag 40763310  T
Q  122 atcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 166  Q
    |||||||||| ||||||||||| |||| ||| | ||||||||||||    
T  40763311 atcatagtttatattggtgtgagatttaagtccggaattcacaaca 40763356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 5058311 - 5058408
Alignment:
Q  58 tatattattgttgttgcttgtggtttac---tttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagt 152  Q
    |||||| |||||||||||||||||| ||   |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  5058311 tatattgttgttgttgcttgtggttaacatttttggttgttggttgccattgatacttgttccacacatcataatttatattggtgtgaaatttgagt 5058408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 27637556 - 27637454
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtggtttac-tttggttgttggttgccattgatacttgctc 116  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||    
T  27637556 gattgtggttttgctatgcacttggtttatagactaggtctatattgttgttgttgcttgtgatttacttttggttgttgattaccattaatacttgctc 27637457  T
Q  117 cac 119  Q
    |||    
T  27637456 cac 27637454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 213693 - 213803
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggttt---ac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| ||||||||| ||| ||||||||| |||||||| ||||| |||||||||||||   || ||||||| ||| |||| |||||||||||    
T  213693 gattgtggttttgctatgcacttagttaatagactaggtctatattgttgttattgcttgtggttttttacatttggttattgattgctattgatacttg 213792  T
Q  114 ctccacacatc 124  Q
    ||| |||||||    
T  213793 ctctacacatc 213803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 538334 - 538387
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  538334 ttgctccacacatcatagtttatattggtgtgagttttgagtctgaattcacaa 538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 13488517 - 13488569
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  13488517 ctccacacatcatattttgtattggtgtgagatttgagtccgaattcacaaca 13488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 534072 - 534127
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||    
T  534072 ttgctccacacatcatagtttctattggtgtgagttttgagtccgaattcacaaca 534127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 3075604 - 3075549
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  ||| |||| ||||||||||||    
T  3075604 ttgctccacacatcatagtttgtattggtgtgagtttttagtccgaattcacaaca 3075549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 30682777 - 30682722
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||||| | ||||||||||    
T  30682777 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgtattcacaaca 30682722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 32637140 - 32637196
Alignment:
Q  114 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtta 170  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||| |||||    
T  32637140 ctccacacatcatagtttgtattggtgtgagttttgaatccgaattcacaatagtta 32637196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 33831992 - 33832047
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacag 167  Q
    |||||||||||||||||||||||||| |||| || |||||||| |||||||||||||    
T  33831992 ttgctccacacatcatagtttgtatttgtgt-aattttgagtccgaattcacaacag 33832047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 39468403 - 39468347
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacag 167  Q
    ||||||||||||||||||||||||||||||| |  |||||||  |||||||||||||    
T  39468403 ttgctccacacatcatagtttgtattggtgtaagttttgagttcgaattcacaacag 39468347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 5887289 - 5887235
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||    
T  5887289 ttgctccacatatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 5887235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 28750510 - 28750455
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||| |||||||||||||||  ||||||||  |||||||||||    
T  28750510 ttgctccacacatcataatttgtattggtgtgagttttgagtccaaattcacaaca 28750455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 31183287 - 31183341
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||    
T  31183287 ttgctccacacatcatggtttgtattggtgtg-attttgagtccgaattcacaaca 31183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 42426090 - 42426035
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||| ||||||  |||||||  ||||||||||||    
T  42426090 ttgctccacacatcatagtttgtatttgtgtgagttttgagttcgaattcacaaca 42426035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 42428285 - 42428244
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagt 152  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  42428285 ttgctccacacatcatagtttgtattggtgtgagttttgagt 42428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 16649689 - 16649635
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||| || | |||||||  ||||||||||||    
T  16649689 ttgctccacacatcatagtttgtattggtatg-attttgagttcgaattcacaaca 16649635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 36073897 - 36073866
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtg 142  Q
    ||||||||||||||||||||||||||||||||    
T  36073897 ttgctccacacatcatagtttgtattggtgtg 36073866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 42434934 - 42434794
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctat--attattgttgttgcttgtggtttac---tttggttgttggttgccattgatactt 112  Q
    ||||||||||||| |||||||||| || ||||||||| |||||  ||| |||||||||||||||||| ||   |||||||||||||||||||||||||||    
T  42434934 gattgtggttttgctatgcacttgatt-atagactaggtctatctattgttgttgttgcttgtggttaacatttttggttgttggttgccattgatactt 42434836  T
Q  113 gctccacacatc--atagtttgtattggtgtgaaatttgagt 152  Q
    ||||| ||||||  ||||||||||||||||||||||||||||    
T  42434835 gctcctcacatcatatagtttgtattggtgtgaaatttgagt 42434794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 18655627 - 18655738
Alignment:
Q  19 gattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtg---gtttac-tttggttgttggttgccattgatacttg 113  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||    ||||| ||||||| ||||||| |||||||| |||    
T  18655627 gattgtggttttgctatgcacttggtttatagactagatctatattgttgttattgcttgtgtttatttacatttggttattggttgtcattgatatttg 18655726  T
Q  114 ctccacacatca 125  Q
    ||||||||||||    
T  18655727 ctccacacatca 18655738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 4283749 - 4283813
Alignment:
Q  20 attgtggttttgttatgcacttggtttatagacta-gtctatattattgttgttgcttgtggttt 83  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  4283749 attgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggttt 4283813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 3303525 - 3303474
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcac 162  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3303525 ttgctccacacatcatagtttgtattggtgtgagatttgagtccgaattcac 3303474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 4743082 - 4743027
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  4743082 ttgctccacacattatagtttgtattggtgtgagatttgagtccgaattcacaaca 4743027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 15213100 - 15213155
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  15213100 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 15213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 30143654 - 30143708
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  30143654 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 30143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 11384208 - 11384352
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtgg---tttac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||| ||| |||| ||| ||||| ||||||||||   ||||| ||||||| ||| ||| || ||||||||    
T  11384208 agattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttggttattgcttgtcaatgatactt 11384307  T
Q  113 gctccacacatc--atagtttg--tattggtgtgaaatttgagtc 153  Q
     |||||||||||  ||| ||||  |||||||||||||||||||||    
T  11384308 actccacacatcatataatttgtatattggtgtgaaatttgagtc 11384352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 5689581 - 5689635
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  5689581 ttgctccacacatcatagtttgtattggtgtg-attttgagtcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 40328999 - 40329102
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||| ||| |||| | | ||||| ||||||||||||   ||| ||||||||||||||| |||||||||||    
T  40328999 agattgtggttttgctatgcacttgttttctagattagatctagactgttgttattgcttgtggttatttacatttggttgttggttgtcattgatactt 40329098  T
Q  113 gctc 116  Q
    ||||    
T  40329099 gctc 40329102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 41366472 - 41366420
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  41366472 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 6599279 - 6599338
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 171  Q
    |||||| ||||||||||||||||||||||||| | |||||||| |||||||||||| ||||    
T  6599279 ttgctctacacatcatagtttgtattggtgtg-attttgagtccgaattcacaacaattat 6599338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 6674732 - 6674791
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 171  Q
    |||||| ||||||||||||||||||||||||| | |||||||| |||||||||||| ||||    
T  6674732 ttgctctacacatcatagtttgtattggtgtg-attttgagtccgaattcacaacaattat 6674791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 12702485 - 12702431
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  12702485 ttgctccacacatcatagtttgtattgatgtg-attttgagtccgaattcacaaca 12702431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 3772415 - 3772521
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagact-agtctatattattgttgttgcttgtgg----tttactttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||||||| ||| |||| | | |||| ||| ||||||||||||||||    |||  ||||||  ||||||||||||||||| |    
T  3772415 agattgtggttttgctatgcacttgatttctagattaaatctagattgttgttgttgcttgtggttattttcttttggtgattggttgccattgatacct 3772514  T
Q  113 gctccac 119  Q
    |||||||    
T  3772515 gctccac 3772521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 17982967 - 17983021
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgag-tctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||||||  ||||||| || ||||||||||||    
T  17982967 ttgctccacacatcatagtttgtattggtgtg--atttgagatcggaattcacaaca 17983021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 4731972 - 4732026
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||| ||||||||||||||| | |||||||  ||||||||||||    
T  4731972 ttgctccacacatcattgtttgtattggtgtg-attttgagttcgaattcacaaca 4732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 18105930 - 18105876
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||| ||||||||||||||||||| ||||| | |||||||||||||||| ||||    
T  18105930 ttgctctacacatcatagtttgtattagtgtg-attttgagtctgaattcataaca 18105876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 34254185 - 34254154
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtg 142  Q
    ||||||||||||||||||||||||||||||||    
T  34254185 ttgctccacacatcatagtttgtattggtgtg 34254154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 34256361 - 34256330
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtg 142  Q
    ||||||||||||||||||||||||||||||||    
T  34256361 ttgctccacacatcatagtttgtattggtgtg 34256330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 4283819 - 4283872
Alignment:
Q  115 tccacacatcata--gtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||  |||||||||||||| ||||||||| | ||||||||||||    
T  4283819 tccacacatcatatagtttgtattggtgtaaaatttgagaccgaattcacaaca 4283872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 40222019 - 40222053
Alignment:
Q  86 tttggttgttggttgccattgatacttgctccaca 120  Q
    ||||||||||||||||||||||||||| |||||||    
T  40222019 tttggttgttggttgccattgatactttctccaca 40222053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 17947 - 17807
Alignment:
Q  18 agattgtggttttgttatgcacttggtttatagactag-tctatattattgttgttgcttgtggtt---tac-tttggttgttggttgccattgatactt 112  Q
    |||||||||||||| |||||| ||| ||| |||| ||| |||| ||| ||||| ||||||||||||   ||| |||| || |||||||| ||||||||||    
T  17947 agattgtggttttgctatgcatttgttttctagattagatctagattgttgttattgcttgtggttatttacatttgattattggttgctattgatactt 17848  T
Q  113 gctccacacatcatagtttgtattggtgtgaaatttgagtc 153  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  17847 gctacacacatcatagtttgtattggtgtgaaatttgagtc 17807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 20269 - 20216
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    ||||||||||||||||||||||||||||| ||  | ||||||| ||||||||||||    
T  20269 ttgctccacacatcatagtttgtattggtatg--agttgagtccgaattcacaaca 20216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 1356 - 1301
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 166  Q
    |||||||||||||||||| ||||||||||||||  |||| ||  ||||||||||||    
T  1356 ttgctccacacatcatagattgtattggtgtgagttttgtgttcgaattcacaaca 1301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 148966 - 148914
Alignment:
Q  111 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 164  Q
    ||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||    
T  148966 ttgctccacacattatagtttgtattgatgtg-attttgagtccgaattcacaa 148914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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