View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_20 (Length: 381)

Name: NF9857_low_20
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_20
NF9857_low_20
[»] chr7 (2 HSPs)
chr7 (17-371)||(30248926-30249283)
chr7 (38-268)||(25627256-25627489)
[»] chr2 (4 HSPs)
chr2 (72-352)||(34324438-34324720)
chr2 (72-352)||(29353138-29353418)
chr2 (103-176)||(44919370-44919443)
chr2 (103-176)||(44913374-44913447)
[»] chr8 (4 HSPs)
chr8 (72-370)||(4027010-4027314)
chr8 (100-177)||(15339032-15339109)
chr8 (100-177)||(15428097-15428174)
chr8 (100-177)||(15519401-15519478)
[»] chr5 (4 HSPs)
chr5 (72-257)||(30650677-30650862)
chr5 (72-257)||(31777024-31777208)
chr5 (100-177)||(42261490-42261567)
chr5 (103-146)||(39725452-39725495)
[»] chr1 (1 HSPs)
chr1 (99-173)||(51869131-51869205)
[»] chr6 (2 HSPs)
chr6 (120-196)||(29299191-29299267)
chr6 (120-178)||(32973512-32973570)
[»] chr4 (3 HSPs)
chr4 (103-173)||(20425740-20425810)
chr4 (120-176)||(9594637-9594693)
chr4 (120-178)||(9573493-9573551)


Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 30248926 - 30249283
Alignment:
Q  17 aataactccttccactctctcgatggccaaatctttgggtgaagaaaaggttagacacatacctcaagatcttgcatcattagttttgtcaaaacttcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30248926 aataactccttccactctctcgatggccaaatctttgggtgaagaaaaggttagacacatacctcaagatcttgcatcattagttttgtcaaaacttcct 30249025  T
Q  117 ttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaaccaggttttcatcaccatgttcagggataatttcacatcta 216  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30249026 ttaaaatctttaaagcgttttgaatgtgcacacaaaacatggtctctcttatttgaaaaccatgttttcatcaccatgttcagggataatttcacatcta 30249125  T
Q  217 tttctcactcctactatgatgatacatcactcatcatacaacagcttgtccataatggtc---gcactgtgtccattttgcatttactgtctagtcagag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||    
T  30249126 tttctcactcctactatgatgatacatcactcatcatacaacagcttgtccataaaggtcgcagcactgtgtccattttgcatttactgtctagtcagag 30249225  T
Q  314 ctttgagaatagactaaaattggacttgccaactccactacaaacggagcaccctatg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30249226 ctttgagaatagactaaaattggacttgccaactccactacaaacggagcaccctatg 30249283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 38 - 268
Target Start/End: Original strand, 25627256 - 25627489
Alignment:
Q  38 gatggccaaatctttgggtgaagaaaaggttagacacat---acctcaagatcttgcatcattagttttgtcaaaacttcctttaaaatctttaaagcgt 134  Q
    |||||||||||||||||||||| ||||||||||  || |   |||  | |||||||||| ||||||| | |||||||||||  | |||||||| ||||||    
T  25627256 gatggccaaatctttgggtgaaaaaaaggttagtaaccttgtaccggaggatcttgcattattagttctatcaaaacttccaatcaaatctttgaagcgt 25627355  T
Q  135 tttgaatgtgtacacaaaacatggtctctcttatttgaaaaccaggttttcatcaccatgttcagggataatttcacatctatttctcactcctactatg 234  Q
    | || ||| ||  | ||| ||||||||||||||||||||||||    |||||| ||||||||| |  ||||||||| ||||||| ||||||| |||||||    
T  25627356 tctggatgcgttaagaaatcatggtctctcttatttgaaaacccttctttcatgaccatgttccgcaataatttcatatctattcctcactcttactatg 25627455  T
Q  235 atgatacatcactcatcatacaacagcttgtcca 268  Q
    |||||||| || ||||| | ||| || |||||||    
T  25627456 atgatacaacaatcatcctgcaagaggttgtcca 25627489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 72 - 352
Target Start/End: Original strand, 34324438 - 34324720
Alignment:
Q  72 cacatacctcaagatcttgcatcattagttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttg 171  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||    
T  34324438 cacatacctcaagatcttgcattattagttttgtcgaaagttcctttaaaatctttgaa-cgttttggatgtgtacacaaaacatggtctctcttatttg 34324536  T
Q  172 aaaaccaggttttcatcaccatgttcagggataatttcacatctatttctcactcctactatgatgatacatcactcatcatacaacagcttgtccataa 271  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||| ||| ||||| ||||    
T  34324537 aaaaccagtgtttcatcaccatgttcagggataatttcatatctatttctcactcctactacgatgatacatcacttatcctacaccaggttgtctataa 34324636  T
Q  272 ---tggtcgcactgtgtccattttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaactccact 352  Q
       |||  | || |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34324637 cagtggctggaccgtgtcctttttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccact 34324720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 72 - 352
Target Start/End: Complemental strand, 29353418 - 29353138
Alignment:
Q  72 cacatacctcaagatcttgcatcattagttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttg 171  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||| | ||||||||||||||||||||||    
T  29353418 cacatatctcaagatcttgcattattagttttgtcaaaacttcctttaaaatctttgaagcgttttggatgcgtaaataaaacatggtctctcttatttg 29353319  T
Q  172 aaaaccaggttttcatcaccatgttcagggataatttcacatctatttctcactcctactatgatgatacatcactcatcatacaacagcttgtccataa 271  Q
    ||||||    |||||||||||||||| |||||||||||| |||||||| |||||| ||||| |||||||||||| ||||| |||| ||| ||||| ||||    
T  29353318 aaaaccctaatttcatcaccatgttcggggataatttcatatctatttatcactcgtactacgatgatacatcattcatcctacaccagtttgtctataa 29353219  T
Q  272 tggtcgcactgtgtccattttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaactccact 352  Q
     | || || |  ||||  |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  29353218 agctcacattaggtcctatttgcacttactgtctagtcggagctttgagaatagactcaaattggacttgccaactccact 29353138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 44919443 - 44919370
Alignment:
Q  103 tgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaac 176  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||  ||| ||||| |||||||||||||||||    
T  44919443 tgtcaaaacttcctttaaaatcttttaagccatttgaatgtgtacgtaaatcatgggctctcttatttgaaaac 44919370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 44913447 - 44913374
Alignment:
Q  103 tgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaac 176  Q
    ||||||||||| |||||||||||||||| || |||| ||| |||   ||| ||||| || ||||||||||||||    
T  44913447 tgtcaaaactttctttaaaatctttaaaacgatttggatgcgtatgtaaaccatggactttcttatttgaaaac 44913374  T

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Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 72 - 370
Target Start/End: Original strand, 4027010 - 4027314
Alignment:
Q  72 cacatacctcaagatcttgcatcattagttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttg 171  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||    
T  4027010 cacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaccatggtctctcttatttg 4027109  T
Q  172 aaaaccaggttttcatcaccatgttcagggataatttcacatctatttctcactcctactatgatgatacatcactcatcatacaacagcttgtccataa 271  Q
    |||||||   |||||||||||||||| ||  |||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||| ||||    
T  4027110 aaaaccaatatttcatcaccatgttcgggactaatttcatatctatttctcactcctactacgatgatacatcactcatcctacatcaggttgtctataa 4027209  T
Q  272 t---ggtcgc---actgtgtccattttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaactccactacaaacggagcac 365  Q
    |    |||||   || || |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||| ||    
T  4027210 taaaagtcgcaggaccgtctcctatttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccacttcaacaggaggac 4027309  T
Q  366 cctat 370  Q
    |||||    
T  4027310 cctat 4027314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 15339109 - 15339032
Alignment:
Q  100 ttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaacc 177  Q
    |||||||||||||| |||||||| |||| ||||| |||| ||| |||   ||||||||| ||||||| || |||||||    
T  15339109 ttttgtcaaaactttctttaaaacctttgaagcgatttggatgcgtaagaaaaacatgggctctcttgttagaaaacc 15339032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 15428174 - 15428097
Alignment:
Q  100 ttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaacc 177  Q
    |||||||||||||| |||||||| |||| ||||| |||| ||| |||   ||||||||| ||||||| || |||||||    
T  15428174 ttttgtcaaaactttctttaaaacctttgaagcgatttggatgcgtaagaaaaacatgggctctcttgttagaaaacc 15428097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 15519478 - 15519401
Alignment:
Q  100 ttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaacc 177  Q
    |||||||||||||| |||||||| |||| ||||| |||| ||| |||   ||||||||| ||||||| || |||||||    
T  15519478 ttttgtcaaaactttctttaaaacctttgaagcgatttggatgcgtaagaaaaacatgggctctcttgttagaaaacc 15519401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 30650677 - 30650862
Alignment:
Q  72 cacatacctcaagatcttgcatcattagttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttg 171  Q
    ||||||||  |||||||||||| |||  || | |||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||    
T  30650677 cacataccggaagatcttgcattattcattctatcaaaacttcctttaaaatctttaaaacgttttggatgtgtaaagaaaacatggtctctcttatttg 30650776  T
Q  172 aaaaccaggttttcatcaccatgttcagggataatttcacatctatttctcactcctactatgatgatacatcactcatcatacaa 257  Q
    ||||      |||||||||||||||| |   |||||||| ||||||| ||||||| ||||||||||||||| |||||||| |||||    
T  30650777 aaaattcttatttcatcaccatgttccgcactaatttcatatctattcctcactcttactatgatgatacaacactcatcctacaa 30650862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 31777024 - 31777208
Alignment:
Q  72 cacatacctcaagatcttgcatcattagttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttg 171  Q
    ||||||||  |||| ||||||| |||  || | ||||||||||| |||||||||||||||||||| || |||||| | ||||||||||||||||||||||    
T  31777024 cacataccagaagaacttgcattattcattctatcaaaacttccattaaaatctttaaagcgtttgga-tgtgtaaagaaaacatggtctctcttatttg 31777122  T
Q  172 aaaaccaggttttcatcaccatgttcagggataatttcacatctatttctcactcctactatgatgatacatcactcatcatacaa 257  Q
    |||||     |||||||||||||||| |    ||||||| || |||| ||||||| ||||||||||||||| |||||||| |||||    
T  31777123 aaaactcttatttcatcaccatgttccgcacgaatttcatatatattcctcactcttactatgatgatacaacactcatcctacaa 31777208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 42261490 - 42261567
Alignment:
Q  100 ttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaacc 177  Q
    ||||||||||||| ||||||||||| || ||||| |||  |||||||  |||| |||||||||||||||| |||||||    
T  42261490 ttttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaacc 42261567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 39725495 - 39725452
Alignment:
Q  103 tgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgta 146  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  39725495 tgtcaaaacttcctttcaaatctttgaagcgatttgaatgtgta 39725452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 51869131 - 51869205
Alignment:
Q  99 gttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaa 173  Q
    ||||||||||||||||| ||||||||||| || || |||| ||||| | ||||| ||||||||||||||||||||    
T  51869131 gttttgtcaaaacttccgttaaaatctttgaaacgatttggatgtgcatacaaaccatggtctctcttatttgaa 51869205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 29299191 - 29299267
Alignment:
Q  120 aaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaaccaggttttcatcaccatgtt 196  Q
    |||||||| ||||||||||||||||| | |||| ||||||||||||| |||||||| ||||  ||||| ||||||||    
T  29299191 aaatcttttaagcgttttgaatgtgttcgcaaatcatggtctctcttgtttgaaaatcaggacttcatgaccatgtt 29299267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 32973570 - 32973512
Alignment:
Q  120 aaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaacca 178  Q
    |||||||| |||||||||||||||||    ||| ||||||||||||||| |||||||||    
T  32973570 aaatctttcaagcgttttgaatgtgtttgtaaatcatggtctctcttatctgaaaacca 32973512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 20425740 - 20425810
Alignment:
Q  103 tgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaa 173  Q
    ||||||||||||||||||||||||| || || |||||||| |||  |||  |||||||||| |||||||||    
T  20425740 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgcgtatgcaatgcatggtctcttttatttgaa 20425810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 9594693 - 9594637
Alignment:
Q  120 aaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaac 176  Q
    |||||||| ||||| ||||||||||| | |||| ||||||||||||||| |||||||    
T  9594693 aaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaac 9594637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 9573493 - 9573551
Alignment:
Q  120 aaatctttaaagcgttttgaatgtgtacacaaaacatggtctctcttatttgaaaacca 178  Q
    |||||||| ||||| ||||||||||| | |||| |||||||||| ||| ||||||||||    
T  9573493 aaatcttttaagcgatttgaatgtgttcgcaaatcatggtctctgttaattgaaaacca 9573551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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