View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_21 (Length: 365)
Name: NF9857_low_21
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 33153421 - 33153770
Alignment:
| Q |
1 |
gtttgggaactgttctacggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagctgaagagagaaag |
100 |
Q |
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| T |
33153421 |
gtttgggaactgttctacggtgcatttcagattacaatattgaacgtgcggatttacttaacgagatccaaggtagaattattgatctgaagagaaaaag |
33153520 |
T |
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| Q |
101 |
gcaagtagcttcttgtattggaatttcgcaaatgaattaacaggattctgcataagttttggtggcactttgggtttcagttcttggatgtaggtaattt |
200 |
Q |
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| T |
33153521 |
gcaagtagcttcttgtattggaatttcgcaaatgaattaacaggattctgcataagttttggtggcactttgggtttcagttcttggatgtaggtaattt |
33153620 |
T |
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| Q |
201 |
gatagtattttttggttttgggctggttaagaaaatgtttatcaaatgtatcatcatgttaacatgtatgtttatcaattcatctgatcgagacacaagg |
300 |
Q |
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| T |
33153621 |
gatagtattttttgtttttgggctggttaagaaaatgtttatcaaatgtatcatcatgttaacatgtatgtttatcaattcatctgatcgagacacaagg |
33153720 |
T |
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| Q |
301 |
ggaaggattgacagtagagagaactggattgtacaaactggtgtaaaaat |
350 |
Q |
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| T |
33153721 |
ggaagtattgacagtagagagaactggattgtacaaactggtgtaaaaat |
33153770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 25081080 - 25081213
Alignment:
| Q |
136 |
attaacaggattctgcataagttttggtggcactttgggtttcagttcttggatgtaggtaatttgatagtattttttggttttgggctggttaagaaaa |
235 |
Q |
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| T |
25081080 |
attaacaggattctgcataagttttggtggcacttcgggtttcagttctaggatgttggtaatttgatagtattttt-ggttttgggctggttaagaaat |
25081178 |
T |
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| Q |
236 |
tgtttatcaa-atgtatcatcatgttaacatgtat |
269 |
Q |
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| T |
25081179 |
tgtttatatctatgtattatcatgttaacatgtat |
25081213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 2363858 - 2363978
Alignment:
| Q |
4 |
tgggaactgttctacggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagctga--agagagaaagg |
101 |
Q |
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| T |
2363858 |
tgggaactgttctacagtgcctttcagataacaatatggaatccgtggatttactgaacgagattcacggtagaattcatgagctaaatagagagaaagg |
2363957 |
T |
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| Q |
102 |
caagtagcttcttgtattggaa |
123 |
Q |
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| T |
2363958 |
tgagtagctt-ttgtattggaa |
2363978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 51577214 - 51577283
Alignment:
| Q |
19 |
ggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagct |
88 |
Q |
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| T |
51577214 |
ggtgcgtttcggataacaatatagaatatgtggatttacttgaccagattcaaggtagaattcttgagct |
51577283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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