View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_22 (Length: 365)

Name: NF9857_low_22
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_22
NF9857_low_22
[»] chr4 (12 HSPs)
chr4 (19-350)||(20579852-20580183)
chr4 (137-205)||(20537766-20537834)
chr4 (206-307)||(51291126-51291227)
chr4 (137-205)||(20598624-20598691)
chr4 (235-305)||(13404205-13404275)
chr4 (206-307)||(949845-949946)
chr4 (209-307)||(14964369-14964467)
chr4 (73-133)||(20537218-20537279)
chr4 (206-281)||(19597114-19597190)
chr4 (256-308)||(32325285-32325337)
chr4 (251-300)||(24546718-24546767)
chr4 (25-57)||(20600673-20600705)
[»] scaffold0717 (2 HSPs)
scaffold0717 (19-123)||(4575-4679)
scaffold0717 (137-343)||(4854-5063)
[»] chr8 (10 HSPs)
chr8 (206-307)||(28459957-28460058)
chr8 (204-343)||(8785247-8785385)
chr8 (235-308)||(18808760-18808833)
chr8 (232-307)||(41207764-41207839)
chr8 (206-300)||(31265044-31265138)
chr8 (205-245)||(42636329-42636369)
chr8 (206-300)||(25279975-25280068)
chr8 (257-307)||(35139039-35139089)
chr8 (261-302)||(4217500-4217541)
chr8 (259-303)||(36782781-36782825)
[»] chr1 (10 HSPs)
chr1 (234-307)||(48872202-48872275)
chr1 (234-308)||(31492929-31493003)
chr1 (232-304)||(9554085-9554157)
chr1 (233-302)||(40406247-40406315)
chr1 (234-285)||(11867817-11867868)
chr1 (208-245)||(46087198-46087235)
chr1 (234-308)||(29523550-29523624)
chr1 (206-340)||(34046366-34046496)
chr1 (233-304)||(11700439-11700511)
chr1 (230-302)||(38598294-38598366)
[»] chr3 (15 HSPs)
chr3 (203-343)||(25298999-25299139)
chr3 (233-307)||(22288466-22288540)
chr3 (234-301)||(53766686-53766753)
chr3 (238-308)||(4842639-4842708)
chr3 (205-308)||(17517593-17517696)
chr3 (229-307)||(22288748-22288826)
chr3 (206-308)||(26886021-26886123)
chr3 (205-279)||(45529083-45529157)
chr3 (255-308)||(4868352-4868404)
chr3 (255-308)||(7590728-7590781)
chr3 (233-297)||(35524282-35524346)
chr3 (204-300)||(46547744-46547839)
chr3 (206-243)||(31625305-31625342)
chr3 (255-308)||(50941718-50941771)
chr3 (257-305)||(37128617-37128665)
[»] scaffold0018 (1 HSPs)
scaffold0018 (254-343)||(67684-67773)
[»] chr2 (5 HSPs)
chr2 (30-102)||(18588810-18588884)
chr2 (206-300)||(18684409-18684503)
chr2 (202-308)||(37082158-37082268)
chr2 (206-300)||(41544025-41544119)
chr2 (264-300)||(37213960-37213996)
[»] scaffold0062 (1 HSPs)
scaffold0062 (208-343)||(2992-3126)
[»] scaffold0009 (1 HSPs)
scaffold0009 (203-307)||(168720-168824)
[»] chr5 (6 HSPs)
chr5 (204-300)||(5394003-5394099)
chr5 (232-306)||(20041607-20041681)
chr5 (238-298)||(17977704-17977764)
chr5 (212-242)||(8221097-8221127)
chr5 (234-299)||(2112592-2112657)
chr5 (253-285)||(8961376-8961408)
[»] chr6 (5 HSPs)
chr6 (227-274)||(2086885-2086932)
chr6 (207-307)||(34184992-34185092)
chr6 (232-307)||(34556186-34556262)
chr6 (206-307)||(5924769-5924868)
chr6 (232-276)||(2976126-2976170)
[»] scaffold0036 (1 HSPs)
scaffold0036 (233-307)||(88277-88351)
[»] chr7 (9 HSPs)
chr7 (238-308)||(32724473-32724543)
chr7 (249-307)||(37797976-37798034)
chr7 (249-306)||(8327837-8327894)
chr7 (207-301)||(17003436-17003530)
chr7 (204-302)||(17302936-17303034)
chr7 (240-308)||(34534785-34534853)
chr7 (234-307)||(46916141-46916214)
chr7 (206-258)||(28770567-28770619)
chr7 (232-308)||(36821778-36821854)
[»] scaffold1719 (1 HSPs)
scaffold1719 (25-63)||(416-454)
[»] scaffold0027 (1 HSPs)
scaffold0027 (232-297)||(13326-13391)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 20579852 - 20580183
Alignment:
Q  19 attcactattcaggtattatatttaagtttttatttgatctttgcaagtttaggtggttagtttctgaagttgaaactcttgatacttttcaatttgaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20579852 attcactattcaggtattatatttaagtttttatttgatctttgcaagtttaggtggttagtttctgaagttgaaactcttgatacttttcaatttgaat 20579951  T
Q  119 ataaataatacttttcaaccataactaactaatattatactaaaagactcctcgtaaaataaactatctaaatccttattttattatgggaaatgttaac 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20579952 atgaataatacttttcaaccataactaactaatattatactaaaagactcctcgtaaaataaactatctaaatccttattttattatgggaaatgttaac 20580051  T
Q  219 aagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttacnnnnnnnaaa 318  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  20580052 aagtgatcctggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttactttttttaaa 20580151  T
Q  319 taataatttcttcattagaaatgctccacagg 350  Q
    |||||||||||||||||| |||||||||||||    
T  20580152 taataatttcttcattaggaatgctccacagg 20580183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 20537766 - 20537834
Alignment:
Q  137 ccataactaactaatattatactaaaagactcctcgtaaaataaactatctaaatccttattttattat 205  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20537766 ccataactaactaatattatactaaaagactccttgtaaaataaactatctaaatccttattttattat 20537834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 51291227 - 51291126
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctt 305  Q
    ||||||||||||| ||||| || ||  ||||||||||||| | ||||| |||| ||||||||||||||| || |||||||  ||||||||||||||||||    
T  51291227 gggaaatgttaacgagtgccccgggggcactctttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtctt 51291128  T
Q  306 ta 307  Q
    ||    
T  51291127 ta 51291126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 20598624 - 20598691
Alignment:
Q  137 ccataactaactaatattatactaaaagactcctcgtaaaataaactatctaaatccttattttattat 205  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||| |||||| ||||||||||||    
T  20598624 ccataactaactaatattatactagaagact-cttgtaaaataaactatataaatcgttattttattat 20598691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 13404275 - 13404205
Alignment:
Q  235 ctctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctt 305  Q
    ||||||||||| | ||| | |||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  13404275 ctctttaagcacctaaagtggtaagattttatgaaagtttatgtatttattacgttggaaattgaagtctt 13404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 949845 - 949946
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctt 305  Q
    |||| |||||||| |||| ||| | | || |||||||||||||||||| ||||  |||||||||||||| || |||||||  |||| |||||||||||||    
T  949845 gggatatgttaacgagtgttcctgaatcattctttaagcatccaaaatggtaaggttttatgaaagtttgtgcatttattgcattgaaaattgaagtctt 949944  T
Q  306 ta 307  Q
    ||    
T  949945 ta 949946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 14964467 - 14964369
Alignment:
Q  209 aaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    |||||||||| |||||||| | |||||| |||||  |  |||| |||| | ||||||||||||||| || |||||||| |||| |||||||||||||||    
T  14964467 aaatgttaacgagtgctccagtaacactttttaaaaactcaaagtagtcagattttatgaaagtttgtgcatttattacattgaaaattgaagtcttta 14964369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 20537218 - 20537279
Alignment:
Q  73 tggttagtttctgaagttgaaactcttgatacttttca-atttgaatataaataatactttt 133  Q
    |||||||||| |||||||||||||||||||||||| ||  ||||||||||||||| ||||||    
T  20537218 tggttagtttttgaagttgaaactcttgatactttccatttttgaatataaataagactttt 20537279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 19597114 - 19597190
Alignment:
Q  206 gggaaatgttaacaagtgc-tcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatt 281  Q
    ||||||||||||||||||| ||| |||||||||||||||  ||  ||||| ||| ||||||| ||| ||||||||||    
T  19597114 gggaaatgttaacaagtgcctccgggaacactctttaagggtcttaaataataacattttataaaaatttatgtatt 19597190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 32325285 - 32325337
Alignment:
Q  256 taatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    |||||||||||||||||||  |||| |||| ||||||||| ||||||||||||    
T  32325285 taatattttatgaaagtttgcgtatctattgtattggaaagtgaagtctttac 32325337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 24546718 - 24546767
Alignment:
Q  251 aatagtaatattttatgaaagtttatgtatttattatattggaaattgaa 300  Q
    ||||||||| |||||||||| ||| |||||||| || |||||||||||||    
T  24546718 aatagtaattttttatgaaaatttgtgtatttaatacattggaaattgaa 24546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 20600673 - 20600705
Alignment:
Q  25 tattcaggtattatatttaagtttttatttgat 57  Q
    |||||||||||||||||||||||||||| ||||    
T  20600673 tattcaggtattatatttaagtttttatgtgat 20600705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 4575 - 4679
Alignment:
Q  19 attcactattcaggtattatatttaagtttttatttgatctttgcaagtttaggtggttagtttctgaagttgaaactcttgatacttttcaatttgaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  4575 attcactattcaggtattatatttaagtttttatttgatctttgcaagtttaggtggttagtttctgaactagaaactcttgatacttttcaatttgaat 4674  T
Q  119 ataaa 123  Q
    |||||    
T  4675 ataaa 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 137 - 343
Target Start/End: Original strand, 4854 - 5063
Alignment:
Q  137 ccataactaactaatattatactaaaagactcctcgtaaaataaactatctaaatccttattttattatgggaaatgttaacaagtgctcccggaacact 236  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||  | |||  |||     
T  4854 ccataagtaattaatattatactaaaagactccttgtaaaataaactatctaaattcttattttattataggaaatgttaacgagtgtcctcggggcacg 4953  T
Q  237 cttta---agcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttacnnnnnnnaaataataatttcttcat 333  Q
    |||||   |||| |||||||||||| |||| ||||||||||||| |||| || ||||||||||||||||||||||       ||| ||||||||||||||    
T  4954 ctttaagcagcacccaaaatagtaacatttaatgaaagtttatgcattttttgtattggaaattgaagtctttactttttttaaagaataatttcttcat 5053  T
Q  334 tagaaatgct 343  Q
    ||| ||||||    
T  5054 taggaatgct 5063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 28459957 - 28460058
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctt 305  Q
    ||||||||||||| |||||||||||| ||||||||||||||| ||| | |||| ||||||| ||||||| || |||||||  ||||||||||||||||||    
T  28459957 gggaaatgttaacgagtgctcccggatcactctttaagcatcaaaagtggtaagattttattaaagtttgtgcatttattgcattggaaattgaagtctt 28460056  T
Q  306 ta 307  Q
    ||    
T  28460057 ta 28460058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 343
Target Start/End: Original strand, 8785247 - 8785385
Alignment:
Q  204 atgggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtc 303  Q
    |||| |||||||||| ||||||| |||  ||||||||||||| ||||| | |||| ||||||||||| ||| ||||||||||  ||||||||||||| |     
T  8785247 atggaaaatgttaacgagtgctctcggg-cactctttaagcacccaaagtggtaagattttatgaaattttgtgtatttattgcattggaaattgaaatt 8785345  T
Q  304 tttacnnnnnnnaaataataatttcttcattagaaatgct 343  Q
    |||||       ||| |||||||| |||||||| ||||||    
T  8785346 tttactttttttaaagaataatttattcattaggaatgct 8785385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 18808760 - 18808833
Alignment:
Q  235 ctctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    ||||||||||| | ||||| |||| |||||||||||||||||| |||||||  ||| |||||||||||||||||    
T  18808760 ctctttaagcacctaaaatggtaagattttatgaaagtttatgcatttattgcattagaaattgaagtctttac 18808833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 41207839 - 41207764
Alignment:
Q  232 acactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    ||||||||||| ||||||||||||||| |||||||||| |||| || |||||||  |||| ||||| |||||||||    
T  41207839 acactctttaaacatccaaaatagtaaaattttatgaatgtttgtgcatttattgcattgaaaattaaagtcttta 41207764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 31265138 - 31265044
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaa 300  Q
    ||||||||||||| |||||||||||  |||||||||||   | ||||||||||  ||||||||||  || |||||||| || |||||||||||||    
T  31265138 gggaaatgttaacgagtgctcccggggcactctttaagagcctaaaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaa 31265044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 42636329 - 42636369
Alignment:
Q  205 tgggaaatgttaacaagtgctcccggaacactctttaagca 245  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  42636329 tgggaaatgttaacgagtgctcccggagcactctttaagca 42636369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 25280068 - 25279975
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaa 300  Q
    ||||||||||||| ||||| || ||  |||||||||||   | ||||||||||  ||||||||||  ||||||||||| || |||||||||||||    
T  25280068 gggaaatgttaacgagtgcccctggg-cactctttaagagcctaaaatagtaaatttttatgaaaacttatgtatttaatacattggaaattgaa 25279975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 35139039 - 35139089
Alignment:
Q  257 aatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    |||||||||||||||||| || |||||||  |||| |||||||||||||||    
T  35139039 aatattttatgaaagtttgtgcatttattgcattgaaaattgaagtcttta 35139089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 4217500 - 4217541
Alignment:
Q  261 ttttatgaaagtttatgtatttattatattggaaattgaagt 302  Q
    |||||||||| |||||||||||| |||||| |||||||||||    
T  4217500 ttttatgaaaatttatgtatttagtatattagaaattgaagt 4217541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 36782781 - 36782825
Alignment:
Q  259 tattttatgaaagtttatgtatttattatattggaaattgaagtc 303  Q
    |||||||||||||||| || ||||||| ||||| |||||||||||    
T  36782781 tattttatgaaagtttgtgcatttattgtattgaaaattgaagtc 36782825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 48872275 - 48872202
Alignment:
Q  234 actctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    |||||||||||||| ||| | |||| |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  48872275 actctttaagcatcaaaagtggtaagattttatgaaagtttatgcatttattacattggaaattgaagtcttta 48872202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 31492929 - 31493003
Alignment:
Q  234 actctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    |||||||||||||| |||||||||| ||||||||||||||| || ||||||| |||| ||||||||| |||||||    
T  31492929 actctttaagcatcaaaaatagtaaaattttatgaaagtttgtgcatttattgtattagaaattgaaatctttac 31493003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 9554157 - 9554085
Alignment:
Q  232 acactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtct 304  Q
    |||| ||||||||| ||||| |||||||||||||||||||||| || ||||| | ||||| ||||||||||||    
T  9554157 acaccctttaagcacccaaagtagtaatattttatgaaagtttgtgcatttaatgtattgaaaattgaagtct 9554085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 40406315 - 40406247
Alignment:
Q  233 cactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagt 302  Q
    |||||||||||||| |||||| |||| ||||||||||||||| |||| ||||| ||||| ||||||||||    
T  40406315 cactctttaagcattcaaaatggtaagattttatgaaagtttgtgta-ttattgtattgaaaattgaagt 40406247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 11867868 - 11867817
Alignment:
Q  234 actctttaagcatccaaaatagtaatattttatgaaagtttatgtatttatt 285  Q
    |||||||||||||||||| | |||||||||||||||||||| || |||||||    
T  11867868 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttatt 11867817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 46087235 - 46087198
Alignment:
Q  208 gaaatgttaacaagtgctcccggaacactctttaagca 245  Q
    |||||||||||||||||||||||| |||||||||||||    
T  46087235 gaaatgttaacaagtgctcccggagcactctttaagca 46087198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 29523550 - 29523624
Alignment:
Q  234 actctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    ||||||||||||  || | | |||| ||| ||||||||||| ||||||||||  ||||||||||||||| |||||    
T  29523550 actctttaagcacacagagtggtaagattgtatgaaagtttgtgtatttattgcattggaaattgaagtttttac 29523624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 340
Target Start/End: Complemental strand, 34046496 - 34046366
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctt 305  Q
    ||||||||||||| ||||| |||||| |||||||||||||  |||||| || ||  ||||||||||||| || |||||||   |||||||||||| ||||    
T  34046496 gggaaatgttaacgagtgc-cccgga-cactctttaagcactcaaaatggtgat--tttatgaaagtttgtgcatttattgctttggaaattgaaatctt 34046401  T
Q  306 tacnnnnnnnaaataataatttcttcattagaaat 340  Q
     ||       ||| |||||||||||||||| ||||    
T  34046400 cactttttttaaagaataatttcttcattaaaaat 34046366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 11700511 - 11700439
Alignment:
Q  233 cactctttaagcatccaaaatagtaatatttt-atgaaagtttatgtatttattatattggaaattgaagtct 304  Q
    ||||||||||||| | ||| ||||||  |||| |||||||||| || |||||||  |||||||||||||||||    
T  11700511 cactctttaagcacctaaagtagtaaagtttttatgaaagtttgtgcatttattgcattggaaattgaagtct 11700439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 38598294 - 38598366
Alignment:
Q  230 gaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagt 302  Q
    |||||||||||||||||  ||| | |||||||| ||| ||| ||| || |||||||  |||||||||||||||    
T  38598294 gaacactctttaagcatttaaagtcgtaatattgtattaaattttgtgcatttattgcattggaaattgaagt 38598366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 343
Target Start/End: Original strand, 25298999 - 25299139
Alignment:
Q  203 tatgggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagt 302  Q
    |||||||||||||||||||||| |  ||| |||||||||| || | ||| || ||| ||||||||||||||| || |||||||  |||| |||||||| |    
T  25298999 tatgggaaatgttaacaagtgcccttggagcactctttaaacacctaaagtaataagattttatgaaagtttgtgcatttattgcattgaaaattgaaat 25299098  T
Q  303 ctttacnnnnnnnaaataataatttcttcattagaaatgct 343  Q
    ||||||       ||| ||||||||||| ||||||||||||    
T  25299099 ctttactttttttaaagaataatttctttattagaaatgct 25299139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 22288466 - 22288540
Alignment:
Q  233 cactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| || ||||||||||||| |||||||| ||||||    
T  22288466 cactctttaagtatccaaaatggtaagattttatgaaagtttgtgcatttattatattgaaaattgaaatcttta 22288540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 53766686 - 53766753
Alignment:
Q  234 actctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaag 301  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||||||  |||| |||||||||    
T  53766686 actctttaagcatctaaaatggtaatattttatgaaagtttgtgtatttattgcattgaaaattgaag 53766753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 4842639 - 4842708
Alignment:
Q  238 tttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    |||||||||| ||| | |||| |||||||||||||| | | ||||||||||||||||||||||||||||||    
T  4842639 tttaagcatctaaagtggtaagattttatgaaagttga-gcatttattatattggaaattgaagtctttac 4842708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 17517696 - 17517593
Alignment:
Q  205 tgggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtct 304  Q
    |||||||||||||| |||||  ||||  ||||| ||||||| ||||| | |||| ||| ||||||||||| || |||||||  |||||||||| |||| |    
T  17517696 tgggaaatgttaacgagtgcctccggggcactcattaagcacccaaagtggtaagattgtatgaaagtttgtgcatttattgcattggaaattaaagttt 17517597  T
Q  305 ttac 308  Q
    ||||    
T  17517596 ttac 17517593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 22288748 - 22288826
Alignment:
Q  229 ggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    ||||||||||||||  ||||||||| |||| ||||||||||| ||| || ||||||||||||  ||||| || ||||||    
T  22288748 ggaacactctttaaatatccaaaatggtaagattttatgaaaatttgtgcatttattatattaaaaattaaaatcttta 22288826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 26886021 - 26886123
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctt 305  Q
    ||||||| ||||| |||||| ||||   ||||||||| |||||||| | ||||  |||||||||||||| || ||| ||| ||||| |||||||||| ||    
T  26886021 gggaaattttaacgagtgcttccggggtactctttaaacatccaaagtggtaagtttttatgaaagtttgtgcattcattgtattgaaaattgaagtttt 26886120  T
Q  306 tac 308  Q
    |||    
T  26886121 tac 26886123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 45529083 - 45529157
Alignment:
Q  205 tgggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgta 279  Q
    |||||||||||||| ||||| ||||| | |||||||||||| ||  ||||||||  |||||||||| ||||||||    
T  45529083 tgggaaatgttaacgagtgcccccgggatactctttaagcacccttaatagtaagtttttatgaaaatttatgta 45529157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 4868352 - 4868404
Alignment:
Q  255 gtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    |||| |||||||||||||| | | ||||||||||||||||||||||||||||||    
T  4868352 gtaagattttatgaaagttga-gcatttattatattggaaattgaagtctttac 4868404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 7590781 - 7590728
Alignment:
Q  255 gtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    |||| ||||||||||||||| |||||||||| ||||||||||| |||| |||||    
T  7590781 gtaagattttatgaaagtttgtgtatttattgtattggaaattaaagtatttac 7590728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 35524282 - 35524346
Alignment:
Q  233 cactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaatt 297  Q
    ||||||||||||||  ||| | |||| ||||||| |||||||||| ||||||| |||||||||||    
T  35524282 cactctttaagcatttaaagtggtaaaattttataaaagtttatgcatttattttattggaaatt 35524346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 46547744 - 46547839
Alignment:
Q  204 atgggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaa 300  Q
    ||||||||||||||| |||| ||||||| |||||||||||  ||  | |||||||| ||||||||||  ||||||||| | |  |||||||||||||    
T  46547744 atgggaaatgttaacgagtgttcccgga-cactctttaagggtcttatatagtaattttttatgaaaaattatgtattcaatgcattggaaattgaa 46547839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 31625305 - 31625342
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaag 243  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  31625305 gggaaatgttaacgagtgctcccggagcactctttaag 31625342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 50941771 - 50941718
Alignment:
Q  255 gtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    |||| ||||||||||||||| || |||||||  ||||||||||||||| |||||    
T  50941771 gtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtttttac 50941718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 37128665 - 37128617
Alignment:
Q  257 aatattttatgaaagtttatgtatttattatattggaaattgaagtctt 305  Q
    ||||||||||||||||||||  |||||||| |||| ||||| |||||||    
T  37128665 aatattttatgaaagtttatacatttattacattgaaaattaaagtctt 37128617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 343
Target Start/End: Complemental strand, 67773 - 67684
Alignment:
Q  254 agtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttacnnnnnnnaaataataatttcttcattagaaatgct 343  Q
    ||||||||||||||||||||| |||||||||| | ||||||||| || |||||||       ||| ||||||||||||||||||||||||    
T  67773 agtaatattttatgaaagtttgtgtatttattgttttggaaattaaaatctttacattttttaaagaataatttcttcattagaaatgct 67684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 18588810 - 18588884
Alignment:
Q  30 aggtattatatttaagttttt--atttgatctttgcaagtttaggtggttagtttctgaagttgaaactcttgat 102  Q
    |||||||||||||||||||||  || || ||||||||||||||||| ||||| || |||||||||||||||||||    
T  18588810 aggtattatatttaagtttttttatgtggtctttgcaagtttaggtagttaggttttgaagttgaaactcttgat 18588884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 18684503 - 18684409
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaa 300  Q
    ||||||||||||| ||||||||| | ||||||||||||   | | |||| |||  |||||||||| ||| |||||||| || |||||||||||||    
T  18684503 gggaaatgttaacgagtgctccctggacactctttaagagcctagaataataactttttatgaaaatttgtgtatttaatacattggaaattgaa 18684409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 37082158 - 37082268
Alignment:
Q  202 ttatgggaaatgttaacaagtgctcccggaacactct----ttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaatt 297  Q
    ||||| ||||||||||| ||||||||||   ||||||    ||||||| ||||||| ||||  |||||||||| ||| || |||||||| |||| |||||    
T  37082158 ttatgagaaatgttaacgagtgctcccgaggcactctttaattaagcacccaaaatggtaagcttttatgaaaatttgtgcatttattacattgaaaatt 37082257  T
Q  298 gaagtctttac 308  Q
    ||||| |||||    
T  37082258 gaagtttttac 37082268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 41544119 - 41544025
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaa 300  Q
    ||||||||||||| |||   |||||| |||||||||||  ||  ||||| |||| ||||||||||  ||||||||| |||  |||||||||||||    
T  41544119 gggaaatgttaacgagtatccccggagcactctttaagggtcttaaataataattttttatgaaaaattatgtattcattgcattggaaattgaa 41544025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 37213996 - 37213960
Alignment:
Q  264 tatgaaagtttatgtatttattatattggaaattgaa 300  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  37213996 tatgaaagtttgtgtatttattatattggagattgaa 37213960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 343
Target Start/End: Complemental strand, 3126 - 2992
Alignment:
Q  208 gaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    |||||||||||  ||||| ||   |||||||||||||| ||||| |||||| ||||||||||||||| || |||||||  | ||||||||||||| ||||    
T  3126 gaaatgttaacgggtgcttccatgacactctttaagcacccaaagtagtaagattttatgaaagtttgtgcatttattgcagtggaaattgaagt-ttta 3028  T
Q  308 cnnnnnnnaaataataatttcttcattagaaatgct 343  Q
    |       ||| ||||||||||| ||||||||||||    
T  3027 ctttttttaaagaataatttctttattagaaatgct 2992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 168720 - 168824
Alignment:
Q  203 tatgggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagt 302  Q
    ||||| |||||||||| | |||| |||| ||||| ||||| ||   ||| | |||| ||||||||||||||| || ||||||||||||||||||| ||||    
T  168720 tatggaaaatgttaacgattgctaccgggacactttttaaacacttaaagtggtaagattttatgaaagtttgtgcatttattatattggaaattaaagt 168819  T
Q  303 cttta 307  Q
    |||||    
T  168820 cttta 168824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 5394099 - 5394003
Alignment:
Q  204 atgggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaa 300  Q
    ||||||||||||||| |||||| | |  |||||||||||||||| ||  |||||| ||||||||||||||| || |||| || ||| ||||||||||    
T  5394099 atgggaaatgttaacgagtgcttctgagacactctttaagcatctaaggtagtaagattttatgaaagtttgtgcatttcttgtataggaaattgaa 5394003  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 20041607 - 20041681
Alignment:
Q  232 acactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttt 306  Q
    |||||||||||||||| |||||  ||| |||||| |||| |||||| |||||||  |||||||||||||||||||    
T  20041607 acactctttaagcatctaaaatgataaaattttacgaaaatttatgcatttattgcattggaaattgaagtcttt 20041681  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 17977704 - 17977764
Alignment:
Q  238 tttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattg 298  Q
    |||||||||||||| | |||| ||||| |||||||||||| |||||||  |||||||||||    
T  17977704 tttaagcatccaaagtggtaagattttctgaaagtttatgcatttattgcattggaaattg 17977764  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 8221097 - 8221127
Alignment:
Q  212 tgttaacaagtgctcccggaacactctttaa 242  Q
    |||||||||||||||||||||||||||||||    
T  8221097 tgttaacaagtgctcccggaacactctttaa 8221127  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 2112657 - 2112592
Alignment:
Q  234 actctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattga 299  Q
    |||||||||||||| ||| |||||| ||||||| ||| ||| || |||||||  ||||||||||||    
T  2112657 actctttaagcatctaaagtagtaagattttataaaattttgtgcatttattgcattggaaattga 2112592  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 8961408 - 8961376
Alignment:
Q  253 tagtaatattttatgaaagtttatgtatttatt 285  Q
    |||||||||||||||||||||| ||||||||||    
T  8961408 tagtaatattttatgaaagtttgtgtatttatt 8961376  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 2086932 - 2086885
Alignment:
Q  227 ccggaacactctttaagcatccaaaatagtaatattttatgaaagttt 274  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  2086932 ccggaacactctttaagcatccaaagtggtaatattttatgaaagttt 2086885  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 34184992 - 34185092
Alignment:
Q  207 ggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttt 306  Q
    |||||||||||| ||||  |||| || ||| |||||||| | |||   |||| |||| |||||||||| || |||||||  |||||||||||||||||||    
T  34184992 ggaaatgttaacgagtgtccccgaaatactttttaagcacctaaatgggtaagatttaatgaaagtttgtgcatttattgcattggaaattgaagtcttt 34185091  T
Q  307 a 307  Q
    |    
T  34185092 a 34185092  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 34556262 - 34556186
Alignment:
Q  232 acactctttaagcatccaaaatagtaatatttt-atgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    |||||||||||||| |||| || |||| ||||| |||||||||| |  ||||||| |||||||||||||||| ||||    
T  34556262 acactctttaagcacccaagatggtaaaatttttatgaaagtttgtacatttattgtattggaaattgaagttttta 34556186  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 5924868 - 5924769
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctt 305  Q
    |||||| ||||||||||||  ||||  ||||||||||||| | ||| | |||| ||||||||||||||| || || |||| ||||| ||||| || ||||    
T  5924868 gggaaaggttaacaagtgc--ccggtgcactctttaagcaccaaaagtggtaaaattttatgaaagtttgtgcatatattgtattgaaaattaaaatctt 5924771  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 2976126 - 2976170
Alignment:
Q  232 acactctttaagcatccaaaatagtaatattttatgaaagtttat 276  Q
    |||||||||||||| ||||| | |||||||||||| |||||||||    
T  2976126 acactctttaagcacccaaagtggtaatattttataaaagtttat 2976170  T

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Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 88351 - 88277
Alignment:
Q  233 cactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    ||||||||||| | | ||| | |||||||||||||||||||| || ||||||||||||||||||| |||| ||||    
T  88351 cactctttaagtaccaaaagtggtaatattttatgaaagtttgtgcatttattatattggaaattaaagttttta 88277  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 32724543 - 32724473
Alignment:
Q  238 tttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    |||||||||| ||| |||||| ||||||||||||||| ||||||||||  ||| ||||||||| |||||||    
T  32724543 tttaagcatcaaaagtagtaagattttatgaaagtttgtgtatttattgaattagaaattgaaatctttac 32724473  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 37798034 - 37797976
Alignment:
Q  249 aaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    ||||| |||| ||||||||||| |||||| ||||||||||||| |||||||||||||||    
T  37798034 aaaatggtaagattttatgaaaatttatgcatttattatattgaaaattgaagtcttta 37797976  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 8327837 - 8327894
Alignment:
Q  249 aaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttt 306  Q
    ||||| |||| ||||||| ||||||| |||||||||| ||||||||||||||||||||    
T  8327837 aaaatggtaagattttataaaagtttgtgtatttattgtattggaaattgaagtcttt 8327894  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 17003530 - 17003436
Alignment:
Q  207 ggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaag 301  Q
    |||||||||||| ||||  ||||| || |||||||| || | ||| |||| | ||||||||||||||| || |||||||  ||||||||||||||    
T  17003530 ggaaatgttaacgagtgtccccgggactctctttaaacacctaaagtagtcagattttatgaaagtttgtgcatttattgcattggaaattgaag 17003436  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 17303034 - 17302936
Alignment:
Q  204 atgggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagt 302  Q
    |||| |||||||||| ||||| ||| |  ||||||||||||| | ||| | |||||||| | ||||||||| || |||||||  |||||||||||||||    
T  17303034 atggaaaatgttaacgagtgcccccagggcactctttaagcacctaaagtggtaatattctgtgaaagtttgtgcatttattgcattggaaattgaagt 17302936  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 34534785 - 34534853
Alignment:
Q  240 taagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    |||||| |||||||  ||| ||||||| ||||||| || |||||||  |||||||||||||||||||||    
T  34534785 taagcacccaaaatgataaaattttataaaagtttgtgcatttattgcattggaaattgaagtctttac 34534853  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 46916214 - 46916141
Alignment:
Q  234 actctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtcttta 307  Q
    |||||||||||||| ||| ||| || |||||| |||| |||||| |||||||| ||   |||||||||||||||    
T  46916214 actctttaagcatcaaaagtagaaagattttacgaaaatttatgcatttattacataaaaaattgaagtcttta 46916141  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 28770619 - 28770567
Alignment:
Q  206 gggaaatgttaacaagtgctcccggaacactctttaagcatccaaaatagtaa 258  Q
    ||||||||||||| |||||  |||||||||||||||||||  | |||||||||    
T  28770619 gggaaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaa 28770567  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 36821778 - 36821854
Alignment:
Q  232 acactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac 308  Q
    ||||| |||||||| | ||| | |||| |||||||||||||||  ||||||||| |||| ||||||| ||| |||||    
T  36821778 acactttttaagcaccaaaagtggtaacattttatgaaagtttgcgtatttattgtattagaaattgtagtatttac 36821854  T

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Target: scaffold1719 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1719
Description:

Target: scaffold1719; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 416 - 454
Alignment:
Q  25 tattcaggtattatatttaagtttttatttgatctttgc 63  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  416 tattcaggtattatatttaagtttttatgtgatctttgc 454  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 13326 - 13391
Alignment:
Q  232 acactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaatt 297  Q
    |||||||||||||| |||||||  ||| ||||||||||||||| |||| |||||  ||||||||||    
T  13326 acactctttaagcacccaaaatgttaaaattttatgaaagtttgtgtaattattgcattggaaatt 13391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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