View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_23 (Length: 357)
Name: NF9857_low_23
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 46928881 - 46929226
Alignment:
| Q |
1 |
actagtagtagaactatagtagtagtatattgacatcgattgaattgaaatattggaataaaaatgagaaaagaaatgtcaaatgtgaagaagaagaagg |
100 |
Q |
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| T |
46928881 |
actagtagtagaactatagtagtagtatattgacatcgattgaattgaaatattggaataaaaatgagaaaagaaatgtcaaatgtgaagaagaagaagg |
46928980 |
T |
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| Q |
101 |
tgggtttcacttcacgtcaaacgaaacgagtgtcttctttttcactttgtagctttccttttgttgtttattgtcaccaaccaaacacagtctctaattt |
200 |
Q |
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| T |
46928981 |
tgggtttcacttcacgtcaaacgaaacgagtgtcttctttttcactttgtagctttccttttgttgtttattgtcaccaaccaaacacagtctctaattt |
46929080 |
T |
|
| Q |
201 |
cgaatccctagctatcatacattttctaatgcacgtctctactctaccttatagcatcgaactacgtgatgggaatgaattaaagactgttttgagtgac |
300 |
Q |
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| T |
46929081 |
cgaatccctagctatcatacattttctaatgcacgtctctactctaccttatagcatcgaactacgtgatgggaatgaattaaagactgttttgagtgac |
46929180 |
T |
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| Q |
301 |
gacatttcttccatccgttgcttctctcattcctagctccaccttt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929181 |
gacatttcttccatccgttgcttctctcattcctagctccaccttt |
46929226 |
T |
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