View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_24 (Length: 347)
Name: NF9857_low_24
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 51098810 - 51098488
Alignment:
| Q |
13 |
agtttctctgcaacttgcattgtatgattgatgtttctgattatttattatgatcatgattatgtaggtcttagctagcaaaacaaaaatttacatggta |
112 |
Q |
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| T |
51098810 |
agtttctctacaacttgcattgtatgattgatgtttctgattatttattatgatcatgattatgtaggtcttagctagcaaaacaaaaatttacatggta |
51098711 |
T |
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| Q |
113 |
cttgagtacgtgacaggagaggagttatttgacaaaatagtaagtgatcatttgcttgttgttaatgccatgtcatgtgtgtgattcagttaatgacatt |
212 |
Q |
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| T |
51098710 |
cttgagtacgtgacaggagaggagttatttgacaaaatagtaagtgatcatttgcttgttgttaatgccatgtcatgtgtgtgattcagttaatgacatt |
51098611 |
T |
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| Q |
213 |
taaccaggttaattgtattcataggcttccaagggtaaacttcctgaaggtgaaggtagaaaattgttccaacagttgattgatggtgtgagctactgcc |
312 |
Q |
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| T |
51098610 |
taaccaggttaattgtattcataggcttccaagggtaaacttcctgaaggtgaaggtagaaaattgttccaacagttgattgatggtgtgagctactgcc |
51098511 |
T |
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| Q |
313 |
acagtaaaggtgtcttccacagg |
335 |
Q |
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| T |
51098510 |
acagtaaaggtgtcttccacagg |
51098488 |
T |
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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 19962221 - 19962309
Alignment:
| Q |
68 |
atgattatgtaggtcttagctagcaaaacaaaaatttacatggtacttgagtacgtgacaggagaggagttatttgacaaaatagtaag |
156 |
Q |
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| T |
19962221 |
atgattatgcaggtcttggctagcaaaaccaaaatttatatggtacttgagtatgtgaatggaggagagttatttgacaaaattgtaag |
19962309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 19962682 - 19962777
Alignment:
| Q |
240 |
tccaagggtaaacttcctgaaggtgaaggtagaaaattgttccaacagttgattgatggtgtgagctactgccacagtaaaggtgtcttccacagg |
335 |
Q |
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| T |
19962682 |
tccaaaggtaaacttactgaagctcatggtaggaagatgttccaacaattgattgatggtgtgagttactgccacaataaaggtgtctttcacagg |
19962777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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