View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_25 (Length: 342)

Name: NF9857_low_25
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_25
NF9857_low_25
[»] chr6 (2 HSPs)
chr6 (54-323)||(31197316-31197585)
chr6 (54-323)||(31176712-31176981)
[»] scaffold0049 (1 HSPs)
scaffold0049 (54-301)||(37765-38012)
[»] chr7 (2 HSPs)
chr7 (62-184)||(20905380-20905502)
chr7 (135-301)||(6963082-6963248)
[»] chr1 (2 HSPs)
chr1 (62-295)||(25139943-25140177)
chr1 (103-293)||(40090838-40091027)
[»] chr3 (1 HSPs)
chr3 (95-287)||(8119576-8119769)
[»] chr2 (5 HSPs)
chr2 (62-292)||(25854218-25854448)
chr2 (62-197)||(25195753-25195888)
chr2 (138-197)||(30937987-30938046)
chr2 (54-127)||(28421303-28421376)
chr2 (232-300)||(25614415-25614483)
[»] chr8 (2 HSPs)
chr8 (54-223)||(17341246-17341415)
chr8 (105-151)||(14985627-14985673)
[»] chr4 (2 HSPs)
chr4 (200-292)||(19637445-19637537)
chr4 (109-151)||(19637586-19637627)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 54 - 323
Target Start/End: Complemental strand, 31197585 - 31197316
Alignment:
Q  54 tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31197585 tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat 31197486  T
Q  154 ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31197485 ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaatacaactactatt 31197386  T
Q  254 ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtct 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31197385 ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtct 31197316  T

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Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 54 - 323
Target Start/End: Complemental strand, 31176981 - 31176712
Alignment:
Q  54 tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat 153  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31176981 tgatttgagattaatccaagaaacatgatgtgggtttaagggttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat 31176882  T
Q  154 ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactatt 253  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  31176881 ttgtcaactccaccacaaccatattgtaataggttgcaatgatgccacccatatccggcaccgtaaaccacttatcttcaagtacaataccactactatt 31176782  T
Q  254 ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtct 323  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31176781 ttcgagatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatctgaatatagtct 31176712  T

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Target: scaffold0049 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 54 - 301
Target Start/End: Complemental strand, 38012 - 37765
Alignment:
Q  54 tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaat-gtctctgaaattccaatttcaaga 152  Q
    ||||||| ||||||  ||||  ||||||||| |||||  | ||||| ||||||||| ||| |||||||||||||  ||| || |||| ||||||||| ||    
T  38012 tgatttgggattaagtcaaggcacatgatgtaggtttttgggttaatcggtggcctacctttaattgagaaaaaaagtccctaaaat-ccaatttcatga 37914  T
Q  153 tttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactat 252  Q
    ||| |||| |||||||||||| |||||||||  ||| ||| ||||   |||||||| |||| ||| ||||| ||||||  |||| |||||||||||||||    
T  37913 tttgtcaattccaccacaaccctattgtaatgagttgcaacgatgtggcccatatccggcaatgtcaaccacttatctagaagtgcaataccactactat 37814  T
Q  253 tttcgggatgatgcaatccattcaagatatagttaaaacgatcatcact 301  Q
    ||||| ||  ||||||||||||||| ||||||||| |||||||||||||    
T  37813 tttcgtgagtatgcaatccattcaaaatatagttataacgatcatcact 37765  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 20905380 - 20905502
Alignment:
Q  62 gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac 161  Q
    |||||| |||||  |||||||||| ||||  | ||||||||||||||| |||||||||| |||||||||||| ||||||||||| |   ||||| |||||    
T  20905380 gattaagccaaggcacatgatgtgagtttttgggttaagcggtggcctacctctaattgggaaaaatgtctccgaaattccaatattgggatttgtcaac 20905479  T
Q  162 tccaccacaaccatattgtaata 184  Q
    ||||||| |||| ||||||||||    
T  20905480 tccaccataaccctattgtaata 20905502  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 301
Target Start/End: Original strand, 6963082 - 6963248
Alignment:
Q  135 gaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaa 234  Q
    ||||||||||||||| ||||| |||||||||| |||||  |||||||||| ||| ||| ||||  || ||| ||  | |   | ||||| ||||| ||||    
T  6963082 gaaattccaatttcatgatttgtcaactccactacaacactattgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaa 6963181  T
Q  235 gtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacgatcatcact 301  Q
     | ||||||| ||||||||||  ||| |||||||  ||||||||||||||||||||  |||||||||    
T  6963182 atgcaataccgctactattttgaggaggatgcaaatcattcaagatatagttaaaataatcatcact 6963248  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 295
Target Start/End: Complemental strand, 25140177 - 25139943
Alignment:
Q  62 gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaa-aaatgtctctgaaattccaatttcaagatttctcaa 160  Q
    |||||| |||||| |||||||||| ||||  | || | ||||||||||  ||||||||| ||| ||| ||||| |||||| |||| ||  || || ||||    
T  25140177 gattaagccaagacacatgatgtgagtttttgggtaatgcggtggcctatctctaattgggaataaaagtctccgaaatttcaatgtcgtgaattatcaa 25140078  T
Q  161 ctccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcggga 260  Q
    |||||| |||||| |||||||||| ||| ||| ||||  |  ||| || || |  || ||||| ||||| |||| | ||| |||| ||||||||| ||||    
T  25140077 ctccactacaaccttattgtaataagttgcaacgatgtgaatcatgtccgggagcgtcaaccacttatcatcaaatgcaacaccattactattttgggga 25139978  T
Q  261 tgatgcaatccattcaagatatagttaaaacgatc 295  Q
     |||||||  |||||||||||||||||||||||||    
T  25139977 ggatgcaaggcattcaagatatagttaaaacgatc 25139943  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 293
Target Start/End: Complemental strand, 40091027 - 40090838
Alignment:
Q  103 gtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggttacaatgatgccacc 202  Q
    |||| ||||||||||||| |||||| ||||||||||| |  |||||| ||||| ||||||| || |||||| |||||||| | ||| ||| ||||  |||    
T  40091027 gtggtctgcctctaattgggaaaaa-gtctctgaaatactgatttcatgatttgtcaactcaactacaaccctattgtaacaagttgcaacgatgtgacc 40090929  T
Q  203 catatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacga 293  Q
    ||| |  || |  || ||||| |||||||| | | |||| ||||||||||||| |||| | ||||| | ||||||||||||||||||||||    
T  40090928 catgttcggtaacgtcaaccacttatcttctaatgcaattccactactattttggggagggtgcaaacaattcaagatatagttaaaacga 40090838  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 287
Target Start/End: Complemental strand, 8119769 - 8119576
Alignment:
Q  95 gttaagcggtggcctgcctctaattgag-aaaaatgtctctgaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggttacaat 193  Q
    ||||| ||| ||||| |||||||||| | |||||  ||||||||||||||||||||||  |  | | ||||||||||  | |||||||||| ||| |||     
T  8119769 gttaatcggaggcctacctctaattggggaaaaaaatctctgaaattccaatttcaaggctagttatctccaccacatgcctattgtaataagttgcaac 8119670  T
Q  194 gatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagtta 287  Q
    ||||  || |||||| | || ||| ||||||||||||  | |||| | |||||||| ||||| |||| ||||||||||||| ||||||||||||    
T  8119669 gatgtgactcatatccgacaatgtcaaccatttatctggaggtactaaaccactaccatttttgggaggatgcaatccatttaagatatagtta 8119576  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 292
Target Start/End: Original strand, 25854218 - 25854448
Alignment:
Q  62 gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac 161  Q
    |||||| |||||| ||||||||||| |||  | ||||| ||  |  || |||||||||| | |||| |||||||||||||||||||||||| |  | | |    
T  25854218 gattaacccaagacacatgatgtggcttttcgggttaatcgaagatctacctctaattgggtaaaaagtctctgaaattccaatttcaagactagttatc 25854317  T
Q  162 tccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggat 261  Q
    ||||| |||  | |||| || || ||| ||| ||||  || |||||| | || ||| ||||||||||||  | || ||||||||||   ||||||||||     
T  25854318 tccactacaggcctattctagtaagtttcaacgatgtgactcatatccgacaatgtcaaccatttatctggaggtgcaataccactgtcattttcgggag 25854417  T
Q  262 gatgcaatccattcaagatatagttaaaacg 292  Q
    ||| ||||| ||| |||||||||||| ||||    
T  25854418 gatacaatcaatttaagatatagttataacg 25854448  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 25195753 - 25195888
Alignment:
Q  62 gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac 161  Q
    ||||| ||||||| ||||||||||| |||  | ||||| |||  |||| |||||| ||| |||||| ||||||| |||||||||||||||  |  | | |    
T  25195753 gattactccaagacacatgatgtggattttcgggttaatcggatgcctacctctatttgggaaaaaagtctctgtaattccaatttcaaggctagttatc 25195852  T
Q  162 tccaccacaaccatattgtaataggttacaatgatg 197  Q
    |||||||||  | |||||||||| ||| ||||||||    
T  25195853 tccaccacaggcctattgtaataagttgcaatgatg 25195888  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 30938046 - 30937987
Alignment:
Q  138 attccaatttcaagatttctcaactccaccacaaccatattgtaataggttacaatgatg 197  Q
    |||||||||||  ||||| |||||||||| |||||||||||  |||| ||||||||||||    
T  30938046 attccaatttcgtgatttgtcaactccactacaaccatattacaataagttacaatgatg 30937987  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 28421303 - 28421376
Alignment:
Q  54 tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaa 127  Q
    ||||||| |||||| |||||| ||||||||||| |||  | ||||| ||| ||||| |||||||||| ||||||    
T  28421303 tgatttgggattaaaccaagacacatgatgtggattttcgggttaaccggaggcctacctctaattgggaaaaa 28421376  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 25614415 - 25614483
Alignment:
Q  232 caagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacgatcatcac 300  Q
    ||||| ||||||||| |||||||  |||| |||||||  |||| |||||||||||| ||||||| ||||    
T  25614415 caagtgcaataccaccactatttgtgggaggatgcaagtcatttaagatatagttataacgatcctcac 25614483  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 17341415 - 17341246
Alignment:
Q  54 tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat 153  Q
    ||||||| |||||| |||||| |||||||| ||  ||  | ||||| ||| || ||||||||||||| | |||| || || |||||||||||||||||      
T  17341415 tgatttgggattaacccaagacacatgatgcggtatttcgggttaatcggaggtctgcctctaattgggtaaaaagtatccgaaattccaatttcaaggc 17341316  T
Q  154 ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaacca 223  Q
    |  | | ||||||||||| | |||||||||| ||| ||| ||||  ||||||||| |||| ||| |||||    
T  17341315 tagttatctccaccacaagcctattgtaataagttgcaacgatgtgacccatatccggcaatgtcaacca 17341246  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 14985627 - 14985673
Alignment:
Q  105 ggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaag 151  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||    
T  14985627 ggcctacctctaattgggaaaaaagtctctgaaattccaatttcaag 14985673  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 292
Target Start/End: Complemental strand, 19637537 - 19637445
Alignment:
Q  200 acccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacg 292  Q
    ||||||||| |||| ||| ||| | ||||||  |||| ||| |||||||| |||||  ||| |||||||||||||||||||||||||| ||||    
T  19637537 acccatatccggcaatgtcaactaattatctggaagttcaaaaccactaccattttttggaagatgcaatccattcaagatatagttataacg 19637445  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 19637627 - 19637586
Alignment:
Q  109 tgcctctaattgagaaaaatgtctctgaaattccaatttcaag 151  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  19637627 tgcctctaattgggaaaaa-gtctctgaaattccaatttcaag 19637586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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