View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_26 (Length: 335)
Name: NF9857_low_26
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 29784446 - 29784778
Alignment:
| Q |
1 |
tgttcttgtaagcaaatatgattgaaccagcatgttctgcagcattcccaacaattggtagcagaattatgctaatgaagctaacagaaataccccaaga |
100 |
Q |
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| T |
29784446 |
tgttcttgtaagcaaatatgattgaaccagcatgttctgcagcattcccaacaattggtagcaaaattatgctaatgaagctaacagaaataccccaaga |
29784545 |
T |
|
| Q |
101 |
atctgaagcagcctagttat---ttatacataaaattgttagatacttaacccattaatctaattttgtattcaatttaaatttcattgaaaattcagct |
197 |
Q |
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| T |
29784546 |
atctgaagcagcctagttattgattatgcacaaaagggttagatacttaa-ccattaatctaattttgcattcaatttaaatgtcattgaaaattcagct |
29784644 |
T |
|
| Q |
198 |
cactataaccaaaataaacatat---tagtactttttacctcaattgttcccacaacatactcagaaagcacagatatgaccaatgtcatacccaccaac |
294 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29784645 |
cattataaccaaaataaacatattagtagtactttttacctcaatggttcccacaacatactcagaaagcacagatatgaccaatgtcatacccaccaac |
29784744 |
T |
|
| Q |
295 |
caactaaatgcactccaaaagcctatctctgctt |
328 |
Q |
| |
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| T |
29784745 |
caactaaatgcactccaaaatcctatcactgctt |
29784778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 169 - 321
Target Start/End: Original strand, 21906208 - 21906366
Alignment:
| Q |
169 |
tcaatttaaatttcattgaaaattcagctcactataaccaaaataaacatatta------gtactttttacctcaattgttcccacaacatactcagaaa |
262 |
Q |
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| T |
21906208 |
tcaatttaaatgtcattgaaaattcagctcactataaccaaaataaacatatttattagtgtactctttacctcaatggttcccacaacatactcagaaa |
21906307 |
T |
|
| Q |
263 |
gcacagatatgaccaatgtcatacccaccaaccaactaaatgcactccaaaagcctatc |
321 |
Q |
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| T |
21906308 |
gcacagatatcaccaatgtcatacccaccaaccaactaaatgcactccaaaatcctatc |
21906366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 5130836 - 5130731
Alignment:
| Q |
1 |
tgttcttgtaagcaaatatgattgaaccagcatgttctgcagcattcccaacaattggtagcagaattatgctaatgaagctaacagaaataccccaaga |
100 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||| || ||||| ||||| || ||||||| |||||||| | |||||| ||||| | |||||| || |
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| T |
5130836 |
tgttcttgaaagcaaatatgattgctcctgcatgttcagctgcattgccaactataggtagcatgattatgctgaggaagctgacagatagaccccatga |
5130737 |
T |
|
| Q |
101 |
atctga |
106 |
Q |
| |
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|||||| |
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|
| T |
5130736 |
atctga |
5130731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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