View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_27 (Length: 334)

Name: NF9857_low_27
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_27
NF9857_low_27
[»] chr6 (4 HSPs)
chr6 (1-190)||(24946705-24946894)
chr6 (12-141)||(9320450-9320579)
chr6 (196-289)||(8551569-8551662)
chr6 (134-194)||(9320380-9320441)
[»] chr4 (5 HSPs)
chr4 (8-190)||(41456467-41456649)
chr4 (18-123)||(20702965-20703070)
chr4 (25-119)||(20707507-20707601)
chr4 (134-175)||(20707431-20707472)
chr4 (240-268)||(38837589-38837617)
[»] chr5 (4 HSPs)
chr5 (195-326)||(25439358-25439489)
chr5 (226-324)||(20283718-20283815)
chr5 (199-268)||(4154704-4154773)
chr5 (256-321)||(4551111-4551176)
[»] chr7 (1 HSPs)
chr7 (190-289)||(14699639-14699738)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 24946894 - 24946705
Alignment:
Q  1 aaaaattaaaggatttctgaaatgcttgagtgaaattccactcagctaatctgtttatatacactctagaggttaaatacaatatggaagttacaaggac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24946894 aaaaattaaaggatttctgaaatgcttgagtgaaattccactcagctaatctgtttatatacactctagaggttaaatacaatatggaagttacaaggac 24946795  T
Q  101 attaatcagctctctagttcctacataaatgtgattaactattgatcttctagctgcatgaataactgtacatattcctagatatttatt 190  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24946794 attaatcagctttctagttcctacataaatgtgattaactattgatcttctagctgcatgaataactgtacatattcctagatatttatt 24946705  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 9320579 - 9320450
Alignment:
Q  12 gatttctgaaatgcttgagtgaaattccactcagctaatctgtttatatacactctagaggttaaatacaatatggaagttacaaggacattaatcagct 111  Q
    ||||| ||||||||||||||||||| |||||| ||  || |||||||||||||||||||   |||||||||||||| |||||||||||||||||| ||||    
T  9320579 gatttgtgaaatgcttgagtgaaatcccactcggcagatttgtttatatacactctagaaagtaaatacaatatgggagttacaaggacattaataagct 9320480  T
Q  112 ctctagttcctacataaatgtgattaacta 141  Q
     ||| |||||||||||||||||||| ||||    
T  9320479 ttctggttcctacataaatgtgatttacta 9320450  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 8551569 - 8551662
Alignment:
Q  196 agaaatgataaatagacacaaaattctgaccacaaaatcaacaccatgggtaattttgatatttcaaccttaattccaggacagttcggtaaaa 289  Q
    ||||||||||| ||||||||||||| |   ||||| | |||||||||||| ||||||| ||||||||||| || || ||| ||||| |||||||    
T  8551569 agaaatgataattagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcaagggcagtttggtaaaa 8551662  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 9320441 - 9320380
Alignment:
Q  134 attaactattgatcttctagctgcatgaataactgtacatattcct-agatatttattttat 194  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||| || ||||||||||||    
T  9320441 attaactattgatcttctacttgcatgaataactatacatattcctaaggtatttattttat 9320380  T

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Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 41456467 - 41456649
Alignment:
Q  8 aaaggatttctgaaatgcttgagtgaaattccactcagctaatctgtttatatacactctagaggttaaatacaatatggaagttacaaggacattaatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  41456467 aaaggatttctgaaatgcttgagtgaaattccactcagctaatctatttatatacactctagaggttaaatacaatatgggagttacaagaacattaatc 41456566  T
Q  108 agctctctagttcctacataaatgtgattaactattgatcttctagctgcatgaataactgtacatattcctagatatttatt 190  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  41456567 aactttctagttcctacataaatgtgattaactattgatcttctagctgcatgaataattgtacatattcctaggtatttatt 41456649  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 20703070 - 20702965
Alignment:
Q  18 tgaaatgcttgagtgaaattccactcagctaatctgtttatatacactctagaggttaaatacaatatggaagttacaaggacattaatcagctctctag 117  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||||||  |||||||||||||| ||||||||| | ||||||||||| |||||    
T  20703070 tgaaatgcttgagtgaaattccactcagctgatctgtttgcatacactctagagagtaaatacaatatgggagttacaagaatattaatcagctttctag 20702971  T
Q  118 ttccta 123  Q
    ||||||    
T  20702970 ttccta 20702965  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 20707601 - 20707507
Alignment:
Q  25 cttgagtgaaattccactcagctaatctgtttatatacactctagaggttaaatacaatatggaagttacaaggacattaatcagctctctagtt 119  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||  ||| |||||||||| ||||||||| | ||||||||||| |||||||    
T  20707601 cttgagtgaaataccactcagctgatctgtttatatacactctagagagtaactacaatatgggagttacaagaatattaatcagctttctagtt 20707507  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 20707472 - 20707431
Alignment:
Q  134 attaactattgatcttctagctgcatgaataactgtacatat 175  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  20707472 attaactattgatcttctagctacatcaataactgtacatat 20707431  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 38837617 - 38837589
Alignment:
Q  240 catgggtaattttgatatttcaaccttaa 268  Q
    |||||||||||||||||||||||||||||    
T  38837617 catgggtaattttgatatttcaaccttaa 38837589  T

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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 195 - 326
Target Start/End: Original strand, 25439358 - 25439489
Alignment:
Q  195 gagaaatgataaatagacacaaaattctgaccacaaaatcaacaccatgggtaattttgatatttcaaccttaattccaggacagttcggtaaaaatagc 294  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  25439358 gagaaatgataaatagacacaaaattctggccacaaaatcaacaccatgggtagttttgatatttcaaccttaattccaggacagttcggtaaaaataga 25439457  T
Q  295 acacaccatcttctttctctcacctctgtgct 326  Q
    ||||||||||||||||||||||||||||||||    
T  25439458 acacaccatcttctttctctcacctctgtgct 25439489  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 20283815 - 20283718
Alignment:
Q  226 cacaaaatcaacaccatgggtaattttgatatttcaaccttaattccaggacagttcggtaaaaatagcacacaccatcttctttctctcacctctgtg 324  Q
    |||||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||||||||  || |||| |||||||||||||  |||||||    
T  20283815 cacaaaatcaacaccatgggtagttttgacatttccaccttaaatccagggcagtttggtaaaaatactac-caccctcttctttctctcctctctgtg 20283718  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 4154773 - 4154704
Alignment:
Q  199 aatgataaatagacacaaaattctgaccacaaaatcaacaccatgggtaattttgatatttcaaccttaa 268  Q
    |||||||| ||||||||||||| |   ||||| | ||||||||| || ||||||| ||||||||||||||    
T  4154773 aatgataactagacacaaaattttagacacaataccaacaccataggcaattttgttatttcaaccttaa 4154704  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 4551176 - 4551111
Alignment:
Q  256 atttcaaccttaattccaggacagttcggtaaaaatagcacacaccatcttctttctctcacctct 321  Q
    ||||||||||||| ||| | ||||||  |||||||||  ||||||||| ||||||||||| |||||    
T  4551176 atttcaaccttaaatcccgaacagttttgtaaaaatattacacaccatattctttctctctcctct 4551111  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 14699738 - 14699639
Alignment:
Q  190 tttatgagaaatgataaatagacacaaaattctgaccacaaaatcaacaccatgggtaattttgatatttcaaccttaattccaggacagttcggtaaaa 289  Q
    |||||||| |||||||| ||||||||||||| |   ||||| | |||||||||||| ||||||| ||||||||||| || || ||| ||||| |||||||    
T  14699738 tttatgaggaatgataactagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcgagggcagtttggtaaaa 14699639  T

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