View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_29 (Length: 328)
Name: NF9857_low_29
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 41920295 - 41920591
Alignment:
| Q |
16 |
acaaggtaagtttaaggttgcttcgttgaattattttcaatctacagtacaaaatatactcatgctaataatgtgtatacattgcagaaagtgtccttgt |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41920295 |
acaaggtaagtttaatgttgcttcgttgaattattttcaatctacagtacaaaatatactcatgctaataatgtgtatgcattgcagaaagtgtccttgt |
41920394 |
T |
|
| Q |
116 |
ggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattgcattgttctacctgcaacagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920395 |
ggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattgcattgttctacctgcaacagt |
41920494 |
T |
|
| Q |
216 |
tttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatgcagttggaactccaaggtgtttattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920495 |
tttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatgcagttggaactccaaggtgtttattt |
41920591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 95 - 313
Target Start/End: Complemental strand, 26830944 - 26830726
Alignment:
| Q |
95 |
cattgcagaaagtgtccttgtggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattg |
194 |
Q |
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|||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||| | | || |||||||| || ||||| || ||||| |
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| T |
26830944 |
cattgcagaaagtgtctttgtggaagaagatatatgttgtttacagttttttctttgttcggaagattgtggcccacatcaacacatttgttttctattg |
26830845 |
T |
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| Q |
195 |
cattgttctacctgcaacagttttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatgcagttgga |
294 |
Q |
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|||||| |||||||||| ||| |||||||||| |||| ||||| |||||||||||||||||||| ||||| | ||||| ||| | ||||| |||||| |
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| T |
26830844 |
cattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttgga |
26830745 |
T |
|
| Q |
295 |
actccaaggtgtttatttt |
313 |
Q |
| |
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|||||||||| ||| |||| |
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| T |
26830744 |
actccaaggtatttttttt |
26830726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 312
Target Start/End: Complemental strand, 26790591 - 26790374
Alignment:
| Q |
95 |
cattgcagaaagtgtccttgtggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattg |
194 |
Q |
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|||||||||||||||| |||| ||||||| ||||| | |||||||||| |||||| |||| || | | | ||| | | || |||||||| ||||| |
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| T |
26790591 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtgcacgtacacacatttgtgttctattg |
26790492 |
T |
|
| Q |
195 |
cattgttctacctgcaacagttttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatgcagttgga |
294 |
Q |
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||| | |||||||||| ||| |||| ||||| |||| ||||| ||||||||| |||||||| | ||||| | ||||| |||||||| || |||||| |
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| T |
26790491 |
catattgttacctgcaactgttatggttcctgaggttgtggtccctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgga |
26790392 |
T |
|
| Q |
295 |
actccaaggtgtttattt |
312 |
Q |
| |
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|| ||||||| ||||||| |
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| T |
26790391 |
acaccaaggtctttattt |
26790374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 260
Target Start/End: Complemental strand, 26784219 - 26784058
Alignment:
| Q |
99 |
gcagaaagtgtccttgtggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattgcatt |
198 |
Q |
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|||||||||||| ||||||||||| | | || | |||||||||| |||||||| ||||| | | | ||||| || || |||||||| ||||||||| |
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| T |
26784219 |
gcagaaagtgtctttgtggaagaaaacatatatggtttacagttttttctttgtccggaagattgtggttcacataaacacatttgtgttatattgcatt |
26784120 |
T |
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| Q |
199 |
gttctacctgcaacagttttggtacctgaagttgcagtcccaaaatggggagctgtttatat |
260 |
Q |
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|| |||||||||| ||| |||| ||||| ||| ||||| ||||||||| |||||||||| |
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| T |
26784119 |
gtgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatat |
26784058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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