View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_31 (Length: 326)
Name: NF9857_low_31
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 49664982 - 49664686
Alignment:
| Q |
17 |
tcacaaacttcgcatctgaatcttcttctattggtcttagaggcgccaaaaccgtctataccacgtaaaatacgataataaacacgaagaaaactagtag |
116 |
Q |
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| T |
49664982 |
tcacaaacttcgcatctgaatcttcttctattggtcttagaggcgccaaaaccgtctaaaccacgtaaaatacgataataaacacgaagaaaactagtag |
49664883 |
T |
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| Q |
117 |
agttacgttatatgcatggaaactaagattgaaaaatatcaaaactgagaggtctagattctggagttagtccatgtagaaattttgaaagttaataaag |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
49664882 |
agttacgttatatgcatggaaactaagattgagaaatatcaaaactgagaggtctagattctggagttagtccatgaagaaattttaaaagttaataaag |
49664783 |
T |
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| Q |
217 |
tggggccatgtggttgaaatactggaaaaggatgggagnnnnnnncaagcagcaatttgacgttgaaagagtcttggggaataagacacactaatct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49664782 |
tggggccatgtggttgaaatactggaaaaggatgggagaaaaaaacaagcagcaatttgacgttgaaagagtcttggggaataagacacactaatct |
49664686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 123 - 292
Target Start/End: Original strand, 3217937 - 3218106
Alignment:
| Q |
123 |
gttatatgcatggaaactaagattgaaaaatatcaaaactgagaggtctagattctggagttagtccatgtagaaattttgaaagttaataaagtggggc |
222 |
Q |
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||||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |||||||||||| |||||||| | || |||||||||| |
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| T |
3217937 |
gttatctgcatggaaactaagattgagaaatataaaaactgagaggtctagtttctggagtgagtccatgtagagattttgaagttaaagaaagtggggc |
3218036 |
T |
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| Q |
223 |
catgtggttgaaatactggaaaaggatgggagnnnnnnncaagcagcaatttgacgttgaaagagtcttg |
292 |
Q |
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| T |
3218037 |
cttgtgattggaacacttgaaaaggatgagagaaaaatacaagcagcaatttgatgttgaaagagtcttg |
3218106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 178
Target Start/End: Original strand, 3223029 - 3223169
Alignment:
| Q |
37 |
tcttcttctattggtcttagaggcgccaaaaccgtctataccacgtaaaat-acgataataaacacgaagaaaactagtagagttacgttatatgcatgg |
135 |
Q |
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||||||| || |||| || |||| |||||| |||||| |||||||||||| | |||||||| ||| | ||||||||||| ||| |||| ||||||| |
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| T |
3223029 |
tcttcttttactggttttggagggcccaaaatcgtctaaaccacgtaaaattaggataataagcactacaaaaactagtag--ttatcttatctgcatgg |
3223126 |
T |
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| Q |
136 |
aaactaagattgaaaaatatcaaaactgagaggtctagattct |
178 |
Q |
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||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
3223127 |
aaactaagattgagaaatatataaactgagaggtctagcttct |
3223169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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