View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_33 (Length: 317)
Name: NF9857_low_33
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 44701550 - 44701858
Alignment:
| Q |
1 |
cttattttcactgcatttgacactcactgcaacttcagtattgccacttcctcgaatatttttgcaaggcatgttgcttatatttccacatttgaaggta |
100 |
Q |
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| T |
44701550 |
cttattttcactgcatttgacactcactgcaacttcagtcttgccacttcctcgaatatttttgcaaggcatgttgcttatatttccacatttgaaggta |
44701649 |
T |
|
| Q |
101 |
cgttattgctgcaggcattatccagatattattcttgatcaattacaatggtatcatctacattattcatctgaaaagacaaaatcagaagcattcaaag |
200 |
Q |
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| T |
44701650 |
ctttattgctgcaggcattatccagatattattcttgatcaattacaatggtatcatctacattattcatctgaaaagac--aatcagaagcattcaaag |
44701747 |
T |
|
| Q |
201 |
ttttcttcaattaaaaagctcatgctttaattctaacaccattacttgtgccacgaaagatgcaattcatcacatcaaagttttcaatatcattattctt |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44701748 |
ttttcttcaattaaaaagctcatgttttaattctaacaccattacttgtgccacgaaaggtgcaattcatcacatcaaagttttcaatatcattattctt |
44701847 |
T |
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| Q |
301 |
acctatgcttc |
311 |
Q |
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||| ||||||| |
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| T |
44701848 |
accaatgcttc |
44701858 |
T |
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