View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_36 (Length: 308)

Name: NF9857_low_36
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_36
NF9857_low_36
[»] chr4 (25 HSPs)
chr4 (28-297)||(4925774-4926041)
chr4 (4-297)||(6649144-6649430)
chr4 (4-297)||(6535244-6535530)
chr4 (4-297)||(6624021-6624307)
chr4 (4-297)||(6589629-6589915)
chr4 (4-297)||(6794533-6794819)
chr4 (4-196)||(6672744-6672934)
chr4 (4-196)||(6726019-6726208)
chr4 (4-297)||(6499939-6500226)
chr4 (4-196)||(6750936-6751125)
chr4 (4-125)||(6713900-6714021)
chr4 (4-294)||(6756554-6756837)
chr4 (55-196)||(8412960-8413098)
chr4 (4-297)||(6547495-6547781)
chr4 (4-297)||(6813863-6814149)
chr4 (4-97)||(6834263-6834356)
chr4 (29-108)||(4925689-4925769)
chr4 (220-297)||(6834466-6834543)
chr4 (4-97)||(25568103-25568196)
chr4 (141-196)||(6834391-6834446)
chr4 (6-88)||(4343055-4343137)
chr4 (6-96)||(6811832-6811922)
chr4 (55-96)||(4135580-4135621)
chr4 (6-46)||(4126286-4126326)
chr4 (6-46)||(4358523-4358563)
[»] scaffold0373 (1 HSPs)
scaffold0373 (4-295)||(11486-11770)
[»] chr6 (9 HSPs)
chr6 (17-96)||(5423877-5423956)
chr6 (17-96)||(5068873-5068952)
chr6 (17-94)||(5368584-5368661)
chr6 (4-96)||(5094152-5094244)
chr6 (17-96)||(5159300-5159379)
chr6 (18-96)||(5356415-5356493)
chr6 (18-96)||(5381774-5381852)
chr6 (55-96)||(5104671-5104712)
chr6 (33-97)||(5148757-5148821)
[»] scaffold0294 (1 HSPs)
scaffold0294 (18-88)||(10475-10545)
[»] chr7 (4 HSPs)
chr7 (6-95)||(34727537-34727626)
chr7 (6-95)||(18929100-18929189)
chr7 (6-95)||(34730695-34730784)
chr7 (6-95)||(34735294-34735383)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 4925774 - 4926041
Alignment:
Q  28 taaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatcttcttggatcgtgtagagttgatga 127  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||      
T  4925774 taaaggctttgtgtggaagccacgaccggtttggtccgggtagtagaataatcatcacaacaagaaatattcatcttcttggatcgtgtagagttgat-- 4925871  T
Q  128 tcgagtgtgtagaa-tagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttg 226  Q
     ||| ||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4925872 -cgaatgtatacaaatagaagaaatggacaaaagtgaatctattaagcttctctgttggcatgcattcaattaatcgaccagtaccgatagaagattttg 4925970  T
Q  227 ctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4925971 ctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 4926041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 6649144 - 6649430
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||  |||||||| |||| |||||||| ||||||||||| |||||||| |||||    
T  6649144 atgatgtgaatgaattggaccaattaaaggctttgtgtggaagccgtgaatggtttggtccggggagtagaattatcatcacaacgagagatatgcatct 6649243  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||| |||||||| ||||||||||   ||||| ||  |||||||||||||   |  |||||||| || |||||||| ||||||||||||||    ||||     
T  6649244 tcttagatcgtgtcgagttgatga---agtgtatactatagaagaaatgggagatagtgaatctcttgagcttttcagttggcatgcattc----aatca 6649336  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    ||||   || | ||||||||||||||||||||||||| | ||| ||| ||| | |||||||||||| |||||| || |||| ||||| ||||||    
T  6649337 accaagtcctacaaaagattttgctacacattcaacagatgtgattgcttattctgggagattgcctctagcacttcaagtccttggttcctat 6649430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 6535530 - 6535244
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  ||  ||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  6535530 atgatgttaatgaattggaccaactaaaggctttgtgtggaagccgagaatggtttggttcggggagtagaataatcatcacaacaagggatatgcatct 6535431  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||| |||| || |||||   ||||| ||||| || |||||||||||||||  || ||||| || ||   |||||| ||||||||||||||||  |        
T  6535430 tcttagatcatgcagagt---tgatcaagtgtataaaatagaagaaatggatgaaagtgaagctcttgctcttttcagttggcatgcattcaagaa---- 6535338  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    ||||   |||||| ||||||||||||||||||||||  | ||| ||| ||| | |||||||||||| |||||| || |||| ||||||||||||    
T  6535337 accaagtccgatagaagattttgctacacattcaacggatgtgattgcttattctgggagattgcccctagcacttgaagtccttgggtcctat 6535244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 6624307 - 6624021
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| |||| |||||||| |||||||||||||| ||||| |||||    
T  6624307 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccgtgaatggtttggtccggggagtagaattatcatcacaacaagggatatgcatct 6624208  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||| | |||| |||||||||    | ||||| || ||| |||||||||||  |  |||||||| || |||||||| ||||||||||||||    || |     
T  6624207 tcttaggtcgtctagagttgac---ctagtgtatacaattgaagaaatggatgagagtgaatctcttgagcttttcagttggcatgcattc----aagca 6624115  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    ||||   |||  | ||| ||||||||||||||||||| | ||| ||| ||| |  |||||||||||||||||| || |||| ||||||| ||||    
T  6624114 accaagtccggcagaaggttttgctacacattcaacagatgtgattgcttattccgggagattgccactagcacttgaagttcttgggtgctat 6624021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 6589915 - 6589629
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||||||||||||||| || ||||||||||||||||| |||| |||  |||||||| |||| ||||||||||| ||||||||||||||||| |||||    
T  6589915 atgatgtgaatgaattggagcagctaaaggctttgtgtggtagccgtgattggtttggtccggggagtagaataataatcacaacaagagatatgcatct 6589816  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||| ||| |||| ||||   | ||| | ||| || |||||||||||||||||||  ||||||  ||||||| ||  ||||||||||||||    || |     
T  6589815 tcttagattgtgtggagt---ttatcaaatgtatacaatagaagaaatggacaaaattgaatcacttaagctgtttagttggcatgcattc----aaaca 6589723  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    ||||   || | | ||||||||||||| ||||||||| | ||| ||| ||| | |||| |||||||||||||| || |||| ||||| ||||||    
T  6589722 accaagtccaaaagaagattttgctacgcattcaacagatgtgattgcttattctgggggattgccactagcacttgaagtccttggatcctat 6589629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 6794533 - 6794819
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    |||||||||||||||||||||| |||||||| |||||||| ||||   |  |||||||| |||| ||||||||||| |||||||||||| ||||||||||    
T  6794533 atgatgtgaatgaattggaccagctaaaggcattgtgtggtagccgcaaatggtttggtccggggagtagaataataatcacaacaagaaatattcatct 6794632  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||| ||| || |  |||   | |||  |||| || |||||||||||||||  || |||||||| ||||||||||| ||||||||||||||    || |     
T  6794633 tcttagattgtatgaagt---ttatcaggtgtatacaatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattc----aagca 6794725  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    ||||   || ||| || ||||||||| |||||||||| | ||| ||| ||| |  |||||||||||||||||| || |||||||||| ||||||    
T  6794726 accaagtccaatagaatattttgctaaacattcaacagatgtgattgcttactcagggagattgccactagcacttgaagtacttggttcctat 6794819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 6672744 - 6672934
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcg-ggtagtagaataatcatcacaacaagagatattcatc 102  Q
    ||||||||||||||||||| || ||||||||||||||||||||| ||||  |||||||| |  || |||||| |||||||||| ||||||||||| ||||    
T  6672744 atgatgtgaatgaattggatcagctaaaggctttgtgtggaagctatgaatggtttggtccaagggagtagagtaatcatcaccacaagagatatgcatc 6672843  T
Q  103 ttcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaa 196  Q
    ||||| |||||||||||||   ||||||||||| |  |||| ||||||||||  || |||||||| |  |||||||| |||||||||| |||||    
T  6672844 ttcttagatcgtgtagagt---tgatcgagtgtatgcaatacaagaaatggatgaaagtgaatctctagagcttttcagttggcatgcgttcaa 6672934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 6726019 - 6726208
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||||||| |||||||||| |||||||| |||| |||||||| |||  |||||||| |||| |||||||| ||||||||||| |||||||  |||||    
T  6726019 atgatgtgaataaattggaccagctaaaggcattgtatggaagccgtgaatggtttggtccggggagtagaattatcatcacaacgagagataagcatct 6726118  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaa 196  Q
    |||| | ||||||  ||||||||    ||||| || |||||||||||||||  || |||||||| | ||||||||| ||||||||||||||||    
T  6726119 tcttagttcgtgtccagttgatg---tagtgtatacaatagaagaaatggatgaaagtgaatctctcaagcttttcagttggcatgcattcaa 6726208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 6500226 - 6499939
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    |||||||||| ||| |||| |||||||||||||||| ||||||||  ||  |||||||| |||| ||||||||||| ||||||||||||||| | |||||    
T  6500226 atgatgtgaacgaactggatcaactaaaggctttgtttggaagccgcgaatggtttggtccggggagtagaataattatcacaacaagagatttgcatct 6500127  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    ||||  ||| ||||||||||||||    ||||||  |||| |||| |||||| || |||||||| || |||||||| | ||||||||||||    || |     
T  6500126 tcttaaatcatgtagagttgatga---ggtgtgtgcaatacaagatatggacgaaagtgaatctcttgagcttttcagctggcatgcattc----aagca 6500034  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggaga-ttgccactagcagttaaagtacttgggtcctat 297  Q
    ||||   || | | ||||||||||||||||||||| | | ||||||  ||| | |||| || |||||||||||| || |||| ||||||||||||    
T  6500033 accaactccaacagaagattttgctacacattcaaaagatgtggtttcttattctgggggatttgccactagcacttgaagttcttgggtcctat 6499939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 6750936 - 6751125
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||  |||||||| | || |||||||||||||||||||||||| ||||  ||||    
T  6750936 atgatgtgaatgaattggaccaactaaaagctttgtgtggaagccgtgaatggtttggtccagggagtagaataatcatcacaacaagaaatatggatct 6751035  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaa 196  Q
    ||||  ||  ||||  ||   ||||| ||||| |  |||| |||||||| || || |||||||| || |||||||| ||||||||||||||||    
T  6751036 tcttacattatgtaaggt---tgatcaagtgtatgcaataaaagaaatgaacgaaagtgaatctcttgagcttttcagttggcatgcattcaa 6751125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 6713900 - 6714021
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||||||| || ||||||||||||||||||||||||||||||   |  |||||||| |||| |||||| |||||||||||||||||||||| | |||    
T  6713900 atgatgtgaataaactggaccaactaaaggctttgtgtggaagccgcaaatggtttggtccggggagtagagtaatcatcacaacaagagatatgcgtct 6713999  T
Q  104 tcttggatcgtgtagagttgat 125  Q
    |||| |||||||||||||||||    
T  6714000 tcttagatcgtgtagagttgat 6714021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 294
Target Start/End: Original strand, 6756554 - 6756837
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||| | ||||||  |||||||| ||| |||||||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||   ||||    
T  6756554 atgatgtcagtgaatttcaccaactacaggttttgtgtggaagccgtgaatggtttggtccgggtagtagaataatcatcacaacaagagataggaatct 6756653  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||| |||| | ||||||   ||||| ||| | |  |||| ||||||||||  || | |||||| || |||||||| ||||||||||||||    || |     
T  6756654 tcttagatcttatagagt---tgatcaagtttatgaaataaaagaaatggatgaaagcgaatctcttgagcttttcagttggcatgcattc----aagca 6756746  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcc 294  Q
    ||||   |||| | |||| ||| ||||||||||||   | ||| ||| ||| | ||||||||||||||||||| || |||| |||||||||    
T  6756747 accaagtccgaaagaagagttttctacacattcaaatgaagtgattgcttattctgggagattgccactagcacttcaagtccttgggtcc 6756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 8412960 - 8413098
Alignment:
Q  55 ggtttggttcgggtagtagaataatcatcacaacaagagatattcatcttcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatgga 154  Q
    |||||||| |||| |||||||||||||||||||||||||| || |||||||||  ||| ||||||||   ||||| ||||| || |||| ||||||||||    
T  8412960 ggtttggtccgggaagtagaataatcatcacaacaagagagatgcatcttcttacatcatgtagagt---tgatcaagtgtatacaataaaagaaatgga 8413056  T
Q  155 caaaggtgaatctattaagcttttctgttggcatgcattcaa 196  Q
    | || |||||||| | ||||||||| ||||||||||||||||    
T  8413057 cgaaagtgaatctctcaagcttttcagttggcatgcattcaa 8413098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 6547781 - 6547495
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||| |||||| |||||||| ||||||| |||||||||||||   |  |||||||| | || || |||||||||||||||||||||||||| | |||    
T  6547781 atgatgtaaatgaactggaccaaataaaggcattgtgtggaagccgcaaatggtttggtcccgggagcagaataatcatcacaacaagagatatgcgtct 6547682  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||| ||||||| ||||||||| |   ||||| |  |||| ||||||||||  ||  ||||||| || |||| ||| ||||||||||||||    || |     
T  6547681 tcttagatcgtgcagagttgatca---agtgtatgaaataaaagaaatggatgaaattgaatctcttgagctattcagttggcatgcattc----aagca 6547589  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    ||||   || ||| ||||||||||||||||||  ||| || |||||| ||| | ||| ||||| ||||||||| || |||| ||||| ||||||    
T  6547588 accaagtccaatagaagattttgctacacatttgacagacatggttgcttattctggaagatttccactagcacttgaagtccttggctcctat 6547495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 6813863 - 6814149
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||  ||||||||  ||| ||||||||||| |||||||| ||| |||| | |||    
T  6813863 atgatgtgaatgaattggagcagctaaaggctttgtgtggaagccacgaatggtttggtctgggcagtagaataataatcacaactagaaatatgcgtct 6813962  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||  ||| || |  | |   | ||| ||||| |  |||||||||||||||  || |||||||| ||||||||||| ||||||||||||||    || |     
T  6813963 tctcagattgtatgaaat---ttatcaagtgtatgcaatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattc----aagca 6814055  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    ||||   |||||| |||||||||||| ||||| |||| | ||| ||  ||| | |||| |||||||||||||| || |||| || |||||||||    
T  6814056 accaagtccgatagaagattttgctaaacatttaacagatgtgatttcttattctgggggattgccactagcacttgaagtcctcgggtcctat 6814149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 6834263 - 6834356
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatat 97  Q
    ||||||| | ||||||| |||||||||| |||||||||||||| |  ||  |||||||||| || ||||||||||||||||| |||||||||||    
T  6834263 atgatgtaactgaattgcaccaactaaatgctttgtgtggaagtcgcgaatggtttggttccggaagtagaataatcatcacgacaagagatat 6834356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 4925769 - 4925689
Alignment:
Q  29 aaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaac-aagagatattcatcttcttg 108  Q
    ||||||||||||||||||||  | | |||||||| | ||||||||||||||||||||||| ||||||||| ||| ||||||    
T  4925769 aaaggctttgtgtggaagccgcggctggtttggtccaggtagtagaataatcatcacaacaaagagatatgcatattcttg 4925689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 6834466 - 6834543
Alignment:
Q  220 gattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctat 297  Q
    ||||||||||||||||||||| | ||| ||| ||| | ||| ||||||||||||||| || |||| ||||| ||||||    
T  6834466 gattttgctacacattcaacagatgtgattgcttattctggaagattgccactagcacttgaagtccttggctcctat 6834543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 25568103 - 25568196
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatat 97  Q
    |||||||||||  |||||| ||| | || |||||||||||| | | | |  ||||||||||||||||||||||| ||||||| || ||||||||    
T  25568103 atgatgtgaatacattggatcaattgaatgctttgtgtggacgtcgtcaatggtttggttcgggtagtagaatagtcatcaccactagagatat 25568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 6834391 - 6834446
Alignment:
Q  141 atagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaa 196  Q
    ||| ||||||||||| || |||||||| || |||||||| ||||||||||||||||    
T  6834391 ataaaagaaatggacgaaagtgaatctcttgagcttttcagttggcatgcattcaa 6834446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 4343055 - 4343137
Alignment:
Q  6 gatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaac 88  Q
    ||||||||| ||||||| |||||||| |||||||||||||| | |    |||||| | | || ||||||||||||||||||||    
T  4343055 gatgtgaataaattggatcaactaaatgctttgtgtggaagtcgtagatggtttgctccagggagtagaataatcatcacaac 4343137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 6811832 - 6811922
Alignment:
Q  6 gatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    ||||| ||| ||||||| || ||||| |||||||| ||||| | |||  |||||||  | ||||| | |||||||||||||||||||||||    
T  6811832 gatgttaataaattggagcagctaaacgctttgtgcggaagtcgtgaatggtttggcaccggtagcaaaataatcatcacaacaagagata 6811922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 4135621 - 4135580
Alignment:
Q  55 ggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    |||||||||| || |||||||||||||||||||| |||||||    
T  4135621 ggtttggttcagggagtagaataatcatcacaaccagagata 4135580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 4126326 - 4126286
Alignment:
Q  6 gatgtgaatgaattggaccaactaaaggctttgtgtggaag 46  Q
    ||||||||| ||||||||||||| || ||||||||||||||    
T  4126326 gatgtgaataaattggaccaactcaatgctttgtgtggaag 4126286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 4358523 - 4358563
Alignment:
Q  6 gatgtgaatgaattggaccaactaaaggctttgtgtggaag 46  Q
    ||||| ||| |||||||||||||||| ||||||||||||||    
T  4358523 gatgtcaataaattggaccaactaaatgctttgtgtggaag 4358563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 11770 - 11486
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatattcatct 103  Q
    |||||||||||||||||||||| |||||||| |||||||| ||||   |  |||||||| |||| ||||||||||| |||||||||||| ||||||||||    
T  11770 atgatgtgaatgaattggaccagctaaaggcattgtgtggtagccgcaaatggtttggtccggggagtagaataataatcacaacaagaaatattcatct 11671  T
Q  104 tcttggatcgtgtagagttgatgatcgagtgtgtagaatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcg 203  Q
    |||| ||| || |  |||   | |||  |||| || |||||||||||||||  || |||||||| ||||||||||| ||||||||||||||    || |     
T  11670 tcttagattgtatgaagt---ttatcaggtgtatacaatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattc----aagca 11578  T
Q  204 accagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcct 295  Q
    ||||   || ||| || ||||||||| |||||||||| | ||| ||| ||| |  |||||||||||||||||| || |||||||||| ||||    
T  11577 accaagtccaatagaatattttgctaaacattcaacagatgtgattgcttactcagggagattgccactagcacttgaagtacttggttcct 11486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 5423877 - 5423956
Alignment:
Q  17 attggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    |||||||||||| || |||||||||||||| ||| |  ||||||||||||| ||||||||||| ||||||||||||||||    
T  5423877 attggaccaactgaatgctttgtgtggaagtcataaatggtttggttcggggagtagaataattatcacaacaagagata 5423956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 5068952 - 5068873
Alignment:
Q  17 attggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    ||||||||||||||| |||||||||||||| | | |  ||||||||||||| ||||||||||||||||| ||||| ||||    
T  5068952 attggaccaactaaatgctttgtgtggaagtcgtaagtggtttggttcgggaagtagaataatcatcaccacaagggata 5068873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 5368584 - 5368661
Alignment:
Q  17 attggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagaga 94  Q
    ||||||||||||||| |||||||||||||| | | |  ||||||||||||| || |||||||||||||| ||||||||    
T  5368584 attggaccaactaaatgctttgtgtggaagtcgtaagtggtttggttcgggaagcagaataatcatcaccacaagaga 5368661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 5094152 - 5094244
Alignment:
Q  4 atgatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    ||||||| |||  ||||||||||||||| |||||||| ||||| ||| |  |||||||| |||| |||||||||||||| || ||||| ||||    
T  5094152 atgatgttaatacattggaccaactaaatgctttgtgcggaagtcataaatggtttggtccggggagtagaataatcattaccacaagggata 5094244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 5159379 - 5159300
Alignment:
Q  17 attggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    ||||||||||||||| |||||||| ||||| ||| |  |||||||||| || |||||||||||||| || ||||| ||||    
T  5159379 attggaccaactaaatgctttgtgcggaagtcataaatggtttggttctgggagtagaataatcattaccacaagggata 5159300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 5356493 - 5356415
Alignment:
Q  18 ttggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    ||||||||||| || | ||||||||| || ||| |  ||||||||| ||| ||||||||||| ||||||||||||||||    
T  5356493 ttggaccaactgaatgttttgtgtggcagtcatcattggtttggtttggggagtagaataattatcacaacaagagata 5356415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 5381774 - 5381852
Alignment:
Q  18 ttggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    |||||||||||||| ||| |||||||||| | | |  |||||||||| || | |||||||||||| ||||| |||||||    
T  5381774 ttggaccaactaaatgctctgtgtggaagtcgtaaatggtttggttcagggactagaataatcatgacaaccagagata 5381852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 5104712 - 5104671
Alignment:
Q  55 ggtttggttcgggtagtagaataatcatcacaacaagagata 96  Q
    ||||||||||||| |||||||||||||| |||||||| ||||    
T  5104712 ggtttggttcggggagtagaataatcattacaacaagggata 5104671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 5148821 - 5148757
Alignment:
Q  33 gctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagatat 97  Q
    |||||||||||||| | | |  ||||||| ||||| ||||||||||| |||||||| ||||||||    
T  5148821 gctttgtgtggaagtcgtcaatggtttggctcgggaagtagaataattatcacaactagagatat 5148757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 10545 - 10475
Alignment:
Q  18 ttggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaac 88  Q
    |||||||||||||| |||||||||||||| | |||  |||||||||| || | |||||||||||| |||||    
T  10545 ttggaccaactaaatgctttgtgtggaagtcgtgaatggtttggttcagggactagaataatcattacaac 10475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 34727626 - 34727537
Alignment:
Q  6 gatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagat 95  Q
    ||||||||| || |||||||| | || |||||||||||||| |||||  ||||||||   || ||||||||||| ||||| |||||||||    
T  34727626 gatgtgaataaagtggaccaattgaatgctttgtgtggaagtcatgaatggtttggtgaaggaagtagaataatgatcactacaagagat 34727537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 18929100 - 18929189
Alignment:
Q  6 gatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagat 95  Q
    ||||||||| ||  ||||||| | || |||||||| ||||| || ||  ||||||||   || |||||||||||||||||||||||||||    
T  18929100 gatgtgaataaagaggaccaattgaatgctttgtgcggaagtcacgaatggtttggtgaaggaagtagaataatcatcacaacaagagat 18929189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 34730784 - 34730695
Alignment:
Q  6 gatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagat 95  Q
    ||||||||| || |||||||| | || |||||||| ||||| || |   ||||||||   || |||||||||||||||||||||||||||    
T  34730784 gatgtgaataaactggaccaattgaatgctttgtgcggaagtcacggatggtttggtgaaggaagtagaataatcatcacaacaagagat 34730695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 34735383 - 34735294
Alignment:
Q  6 gatgtgaatgaattggaccaactaaaggctttgtgtggaagccatgaccggtttggttcgggtagtagaataatcatcacaacaagagat 95  Q
    ||||||||| || |||||||| | || |||||||| ||||| || |   ||||||||   || |||||||||||||||||||||||||||    
T  34735383 gatgtgaataaactggaccaattgaatgctttgtgcggaagtcacggatggtttggtgaaggaagtagaataatcatcacaacaagagat 34735294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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