View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_37 (Length: 306)
Name: NF9857_low_37
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 3765437 - 3765160
Alignment:
| Q |
9 |
tggtgttagagtgtgtaagaatttgatgtatagtttcagaacaataaagcatgccagcatagttacctagataaaataaggaaaatacttaggtaaagtt |
108 |
Q |
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| T |
3765437 |
tggtgttagagtgtgtaagaatttgatgtatagtttcagaacaataaagcatgccagcatagttacctagataaaataaggaaaatacttag-taaagtt |
3765339 |
T |
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| Q |
109 |
ctataggtactgtctcatcaaaaactatcagttttatattttaacagctgcatcaaaaaatgacatatacgatgttgtttagaacaaatcatgtcacaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3765338 |
ctataggtactgtctcatcaaaaactatcagttttatattttaacagctgcatcaaaaaatgacatatacgatgttgtttagaacaaatcatgtcacaaa |
3765239 |
T |
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| Q |
209 |
cctgatgaattgtgtctaaggcacagtatctaagtatggtccataaaataattcaataataaacagtttcaaattgttt |
287 |
Q |
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| T |
3765238 |
cctgatgaattgtgtctaaggcacagtatctaagtatggtccataaaataattcaataataaacagtttcaaattgttt |
3765160 |
T |
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Back To:
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 3256527 - 3256560
Alignment:
| Q |
212 |
gatgaattgtgtctaaggcacagtatctaagtat |
245 |
Q |
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| T |
3256527 |
gatgaattgtgtctaaggcacagtatgtaagtat |
3256560 |
T |
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