View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_39 (Length: 291)
Name: NF9857_low_39
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 38809799 - 38810075
Alignment:
| Q |
7 |
cttcagctattcttaactttcctcatgaacattattttccttgcagtgtggtatgtaacccttctaagccgtcttcttcctccaattcaaccnnnnnnnn |
106 |
Q |
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| T |
38809799 |
cttcagctattcttaactttcctcatgaacattattttccttgcagtgtggtatataacccttctaagccgtcttcttcctccaattcaacctcatcatc |
38809898 |
T |
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| Q |
107 |
nnnnnnnnnttcaaaggttaaatcggaacttggtgaacaagttatagagtttgagtatttggatgaaaaattattagaggaactcttggattttgagagc |
206 |
Q |
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| T |
38809899 |
atcatc---ttcaaaggttaaatcggaacttgttgaacaagttatagagtttgagtatttggatgaaaaattattagaggaactcttggattttgagagc |
38809995 |
T |
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| Q |
207 |
atcatcaaccaggacttgttcaagtaggagttacttgatttaagcatgagtgattttgttctgtttttaatcctaaatct |
286 |
Q |
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| T |
38809996 |
atcatcaaccaggacttgttcaagtaggagttacttgatttaagcatgagtgattttgttctgtttttaatcctaaatct |
38810075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 124 - 275
Target Start/End: Original strand, 38811998 - 38812149
Alignment:
| Q |
124 |
ttaaatcggaacttggtgaacaagttatagagtttgagtatttggatgaaaaattattagaggaactcttggattttgagagcatcatcaaccaggactt |
223 |
Q |
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| T |
38811998 |
ttaaatcagagcttggtgaacaagttctagattttgagtattgggatgaaacattgttagaggaactcttggattttgagagcatcctcaaccaaaactt |
38812097 |
T |
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| Q |
224 |
gttcaagtaggagttacttgatttaagcatgagtgattttgttctgttttta |
275 |
Q |
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| T |
38812098 |
gttcaaggaggagttacttgatttaagcatgagtgatcttgttctgttttta |
38812149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 116 - 244
Target Start/End: Original strand, 38822839 - 38822967
Alignment:
| Q |
116 |
ttcaaaggttaaatcggaacttggtgaacaagttatagagtttgagtatttggatgaaaaattattagaggaactcttggattttgagagcatcatcaac |
215 |
Q |
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| T |
38822839 |
ttcaacggttaaatcggagcttggtgaacaaattatagagtttgagtatttggatgaaaaattattagaggaactcttggatcctgagaataccatcaat |
38822938 |
T |
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| Q |
216 |
caggacttgttcaagtaggagttacttga |
244 |
Q |
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| T |
38822939 |
aacaactggttcaagtaggagttacttga |
38822967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 38811880 - 38811959
Alignment:
| Q |
15 |
attcttaactttcctcatgaacattattttccttgcagtgtggtatgtaacccttctaagccgtcttcttcctccaattcaac |
97 |
Q |
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| T |
38811880 |
attctcaactttccacatgaacatt---ttccttgcaatgtggtttataattcttctaagtcatcttcttcatccaattcaac |
38811959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 34146213 - 34146317
Alignment:
| Q |
142 |
aacaagttatagagtttgagtatttggatgaaaaattattagaggaactcttggattttgagagcatcatcaaccaggacttgttcaagtaggagttact |
241 |
Q |
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|||| ||||||||||| |||||||| |||| ||||| |||| ||| | |||||||| | || ||||||||||||||||| |||||||||||| ||| |
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| T |
34146213 |
aacaggttatagagttcgagtatttcaatgacaaattgttagtggaccaattggatttccatagtctcatcaaccaggacttgatcaagtaggagtcact |
34146312 |
T |
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| Q |
242 |
tgatt |
246 |
Q |
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||||| |
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| T |
34146313 |
tgatt |
34146317 |
T |
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